barSeed - Barley Seed Development Database

Probe CUST_41104_PI390587928

Source Contig U35_10774

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41104_PI390587928	Hv_44K_v2	CGATGTAATCTTGTTATCTGATCAATAAAGTGTGCTGAGTGGCCGGTTTTTTGTTAAAAA	537	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.276	0.139	0.461	2.475	2.387	5.329
Raw	143.340	120.000	346.572	2283.150	1011.781	2428.020

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC21410	607	3e-25	538 - 597	100	60 / 60	plus	ABC21410
Harvest35	U35_10774	607	3e-25	538 - 597	100	60 / 60	plus

Contig Sequence (607 bp)

>U35_10774 607 Hv_44K_v2
GGTCAAAGTACTTGGCAACCATCCTTTACATTACAAGATACGTCACGGCTCGATAAAGGC
AAAGCAGGTAGCGGACACCCTCCGTTCATGCGGCAAACCAGCTGACAAGGAGGAGCCTCA
TATGTGCTTCTCATCTCGTGAAGCAATGGCCAGGTTCGCTACCAAATCCTTAGGAGTCAG
CGGCGCACGAGCAGCCATTACAAGAATTCATGGGCATGAGACTCCCAACTCCATGTATGT
TGTGGCACAGATCGCCCAGTTCAGCAATAACGTGGTGCCATGCCACCCTATGGATTTCCC
GTATGAGGTCTTTTATTGCCACCGGCCGAAAGAGGTGCAGTCTTTGACGGTGCAACTCAA
GGTCTTGGAAGATGGGACAACGGGCGTGACGGCAACAGCCATGTGCCACATGAACACATC
TGATTGGGACGAGCAGTACTTTGAGCTATTAGGCGGAGTGCGTGGTGAACCTATTTGCCA
CTACATGCCCACCAATTACATCATGTTCTATTAGATATATTTAAATTTCCTGATAAACGA
TGTAATCTTGTTATCTGATCAATAAAGTGTGCTGAGTGGCCGGTTTTTTGTTAAAAAAAA
AAAAAAA

Homology of Contig U35_10774 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g00400.1	378	7e-70
Arabidopsis v10	None