barSeed - Barley Seed Development Database

Probe CUST_41102_PI390587928

Source Contig U35_46704

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41102_PI390587928	Hv_44K_v2	GCACAAAAAAGATGTACTAGTACTCAATCTCCCCAACCACAATTATTTAGATATAGAGGA	77	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17545.3	1519	2e-24	1407 - 1466	100	60 / 60	plus	ABC47164
MLOC	MLOC_17545.1	2365	9e-22	2311 - 2365	100	55 / 55	plus	ABC47164
MLOC	MLOC_17545.2	2153	9e-22	2099 - 2153	100	55 / 55	plus	ABC47164
JLOC1	JLOC1_12113.1	2178	8e-25	1984 - 2043	100	60 / 60	plus
Harvest21	ABC47164	639	3e-25	78 - 137	100	60 / 60	minus	ABC47164
Harvest35	U35_46704	639	3e-25	78 - 137	100	60 / 60	minus

Contig Sequence (639 bp)

>U35_46704 639 Hv_44K_v2
TTTTTTTTTTTTTTTTTAAAGCAAGTGGCAATATGTTGATTAATACTGGAAAGAATGATA
ATGGGAAAATACATATTTCCTCTATATCTAAATAATTGTGGTTGGGGAGATTGAGTACTA
GTACATCTTTTTTGTGCTTCTGTATGTGCAGTAATTCATCCACCACTGTATATACGCAAA
CCAAACGAAAGAAATGAATAGCAATGTCGGTCAAGGTCCACAGCCGGTCCCTAACATTTG
GGAAGATCGGACGGCGGAGGCATGAGCTTCTGGTCAGGCAACGGACCATCATTGACCACC
CATGCCATCTTCAGGCCCCAGCTGGTGTGCACCTCAAGGTGGCAATGCATGAACCATACA
CCCGGGTTATCAGCGAAGAACCTGATGGCGACCCAGCCTCCGGCGGGGACGCCGACGGTG
TTCCTCTGCACTGGATCGAGCAGGTTGAACCCGGCGGGATGGCTGGACGGGTCGTANTTG
CCGACGCCTTGCCCCACAACAAAGAAGTCGTACCCGTGCAGGTGCAGCGGGTGGCTCTCG
GCGCCCTGGATGCTCGTGTCCTGCAGCACCACCTCCACGCTCGTGTTGTACGGCAGCACA
GCTACCTTGGTCCCGTTCGACACGTTCGTGTTGTTTGGC

Homology of Contig U35_46704 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g16610.1	579	1e-86	protein\|laccase precursor protein, putative, expressed
Brachypodium v1_2	Bradi1g66720.1	573	8e-91
Arabidopsis v10	AT5G60020.1	577	2e-75	\| Symbols: LAC17, ATLAC17 \| laccase 17 \| chr5:24168072-24170223 FORWARD LENGTH=577