barSeed - Barley Seed Development Database

Probe CUST_41100_PI390587928

Source Contig U35_10777

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41100_PI390587928	Hv_44K_v2	TAGAATGGAATGGTTTCCAGACCAAAGCTGTTGTGTTCCATCTGTAATTTGTTCTTTTTT	460	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371135	2751	2e-24	2605 - 2664	100	60 / 60	plus	None
MLOC	MLOC_7528.1	1804	2e-24	1667 - 1726	100	60 / 60	plus	None
MLOC	MLOC_76890.1	942	3e-22	786 - 844	98	58 / 59	plus	ABC10333
JLOC1	JLOC1_4968.1	1844	8e-25	1590 - 1649	100	60 / 60	plus
JLOC1	JLOC1_51280.1	867	1e-22	113 - 171	98	58 / 59	minus
Harvest21	ABC26148	578	3e-25	461 - 520	100	60 / 60	plus
Harvest35	U35_10777	578	3e-25	461 - 520	100	60 / 60	plus

Contig Sequence (578 bp)

>U35_10777 578 Hv_44K_v2
CGAAGCCGCTCTCTATCGAGCCCCATTTCAGCACCACCTCAAAGGACGACGAAGCCTCCA
CCCTTGAGACCGTCGTGAAGTGCAAGGAAGCCGAAGCAAAACTGTTCCAGAAGCTGGCCG
ACGATGCCCGGAAGGACGTGGAGAACTACCGGCAGATGGTCCGCAACAGAAACCAGAGCC
TGGAGGAGGAGTACGCGTCGAACGTGGCGAAGCTGTGCTTGCAGGAGGCGGAGGAGAAGA
GGAGGAAGAAGATGGAGGAGCTCAAGACGCTGGAGAACTCGCACTACGACTACCACAAGA
TGAAGCTGCGGATGCAGACCGAGATCCAGGGCCTGCTCGAGCGGATGGAGGCCACAAAGA
AGATGTGGGTGTAGAGAGGAACCCCGGTAAGAAAAAAAAAAGATATCACCATCCGCCGCT
CCTGAATGCCTGGAGATTCGTTGTTGTTGTTGTCCATTATTAGAATGGAATGGTTTCCAG
ACCAAAGCTGTTGTGTTCCATCTGTAATTTGTTCTTTTTTTCTACCACCCGTTGTTAACT
GTTATAAGCGGAGGAGGCCTAACCTTGCGCCCGGCGGA

Homology of Contig U35_10777 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g68580.1	769	9e-54
Arabidopsis v10	None