- Probe CUST_4108_PI390587928
- Source Contig U35_28754
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_4108_PI390587928 | Hv_44K_v2 | ATGACCTCAACGCCTTCAAGTTCAGCCCCATCAAGGAGTCCATCGTCTCCCGCGAGATGA | 218 | GeneList: darkorange MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.720 | 0.988 | 3.547 | 2.470 | 0.752 | 0.588 |
| Raw | 121.280 | 227.651 | 811.569 | 882.620 | 99.045 | 83.755 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_11312.1 | 1638 | 7e-23 | 1345 - 1404 | 98 | 59 / 60 | minus | ABC00455 ABC00788 ABC41276 |
| MLOC | MLOC_11312.2 | 1484 | 7e-23 | 1102 - 1161 | 98 | 59 / 60 | minus | ABC00455 ABC00788 ABC41276 |
| JLOC1 | JLOC1_7485.2 | 1561 | 4e-23 | 288 - 347 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_7485.1 | 1906 | 4e-23 | 267 - 326 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC27793 | 695 | 3e-25 | 219 - 278 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00455 | 1300 | 3e-25 | 200 - 259 | 100 | 60 / 60 | plus | ABC00455 |
| Harvest21 | ABC00062 | 1491 | 1e-23 | 202 - 261 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00593 | 610 | 6e-22 | 102 - 162 | 97 | 59 / 61 | plus | |
| Harvest35 | U35_28754 | 695 | 3e-25 | 219 - 278 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_416 | 1415 | 1e-23 | 231 - 290 | 98 | 59 / 60 | plus |
Contig Sequence (695 bp)
>U35_28754 695 Hv_44K_v2 CAGGAATTCGGTCACGAGGGTCGTCACCCATCTCAGCAAAAAAGAAGCTAGCACAGTCTC CACACACACCATGGCAGCCATGGCCACCACCGCCTCCAGCCTCCTCAAGAGCTCCTTCTC CGGCGTCCGCCTCCCGGCGGCGGCCCGCACCCCGTCCTGCGTTGCCACCCCGCGCGCCGG CGCCATCTGCAACTCAATCTCATCCTCCACTCCTCCCTATGACCTCAACGCCTTCAAGTT CAGCCCCATCAAGGAGTCCATCGTCTCCCGCGAGATGACCCGCCGCTACATGACCGACAT GATCACCTACGCCGACACCGACGTCGTCATCGTCGGCGCCGGGTCCGCGGGGCTGTCCTG CGCGTACGAGCTCTCCAAGGACCCCTCCATCAGCATCGCCATCATCGAGCAGTCCGCGCC CCAACGTCAAGCTCTTCAACGCCGTCGCCGTGGAGGACCTCATCGTCAAGGAGAACCGCG TCGCCGGAGTCGTCACCAACTGGGCGCTCGTCTCCATGAACCACGACACACAGTCCTGCA TGGACCCCAACGTCATGGAGGCCAAGGTCGTGGTGAGCTCCTGCGGCCACGACGGGCCCT TCGGTGCCACCGGGGTCAAGCGGCTCCAGGACATCGGCATGATCCAGGCGGTGCCCGGGA TGAAGGCGCTTGACATGAACACGGCCGAGGACGCC
Homology of Contig U35_28754 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os07g34570.2 | 310 | 9e-52 | protein|FAD dependent oxidoreductase domain containing protein, expressed |
| Brachypodium v1_2 | Bradi1g25860.1 | 353 | 5e-55 | |
| Arabidopsis v10 | None |