barSeed - Barley Seed Development Database

Probe CUST_41089_PI390587928

Source Contig U35_22755

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41089_PI390587928	Hv_44K_v2	GTCGTCGAGCGGGCCAACCTCGTCACTACCGCGGGCCACCATGGTCGCAGCACCTGCACG	444	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.515	0.388	0.832	5.018	15.620	29.749
Raw	6.384	5.712	14.579	99.778	153.751	307.522

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_22755	504	3e-25	445 - 504	100	60 / 60	plus

Contig Sequence (504 bp)

>U35_22755 504 Hv_44K_v2
TTTCCTGCCAGGTCCGCCGCTGCCTGCTCTCCTCCCACGCCGCCGATGAAGCCCATCGTC
GTCCACGCCGCCGCCGTGGACCGGCGGTGGCTGCTCCCTTTGGCCGTCGGCTCGGCGCTG
TCCCTCTTCATCCTCGTCCTCCTCACCACCGTCCCCTTCCCCTTCGTCCCCTCCTCCACG
CCCTCCCCGGCGCTCTTCGTCGAGCACAAGCTCGCCCCGACGCCGCCGGCCTCCCGCGTC
GCCGGATCCCTCCCTCGCATAGCCTACGTCATCTCCGGATCCGCCAGGGACGCCGCCGCG
CTCCGCCGCGTGCTCCTCGCGCTCTACCACCCCAGGAACCTCTACGTCCTGCACCTAGAT
GCCGAGGCGCCGGAGGCCGACCGCCGGGAGCTAGCCGCCGGCCTCGCGGCGCACCCGGTC
ATAGCCGCCGCCGGCAACGTCCGCGTCGTCGAGCGGGCCAACCTCGTCACTACCGCGGGC
CACCATGGTCGCAGCACCTGCACG

Homology of Contig U35_22755 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g00410.1	425	4e-51
Arabidopsis v10	None