barSeed - Barley Seed Development Database

Probe CUST_41083_PI390587928

Source Contig U35_34732

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41083_PI390587928	Hv_44K_v2	ATCAAGTATAGCACAAACAATTTCACCTTGCTGTAACCCTCCAGGGATCAGTGGATGACA	643	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73112.1	1230	7e-23	981 - 1040	98	59 / 60	minus	None
JLOC1	JLOC1_48657.1	1219	4e-23	925 - 984	98	59 / 60	minus
Harvest35	U35_34732	829	3e-25	644 - 703	100	60 / 60	plus

Contig Sequence (829 bp)

>U35_34732 829 Hv_44K_v2
GGCGATTGGGCCTTCTGNAAATGCTCGAGCGGCCGCTCGTTACCCCGATGCAGTTGAAAA
GAGAGATCTTACCATCCGTCTCGAGAACAACATCCTCTACTCCATGAACGACTTCTCCGG
CTCAGCACACACAAACCGCGTCCTGACACAAGACGGTTTTCTTTACAACATCTACCTCGA
CAACCAAGGTCGTGAGAAGAACCGCAAAGAAGTCGGCTACTACAGCAAGGATATGAAGTT
CACAGGCCACAACAGGACCATCACAGTTGATGGAGGAGTCGAGTATGAGCTGCAGTACAC
ATACGCGCCTTATCAAGGTCTTAGTGCCTACTGTAACATCTACACCGACCCCGCTGGAAA
GGTCCTACGGACAAAGATTGTTGCTGAGGCTGAAGGTGGTGGCGCTGCCACAATTGCCAA
CGAGGAGGAGGCAGACCTATAGTTTATGGGCAAATTAGTTTGGCAGTATACTTTAGTCCT
AATATAACGTCACTATTTCCGTTCAGCGGCCGCTCATGCTCAAGTATAAAGAGTATATAA
CATCTAACCGCATGATACTACAGTTTCGGCAGATGTAACATAACAACCAAGGAATACGGC
ACCACCACCGCACCCCAAGCAAGACACAACAGATTTCAGATCAATCAAGTATAGCACAAA
CAATTTCACCTTGCTGTAACCCTCCAGGGATCAGTGGATGACAACCCTCAGCGTCACCTC
GACGGTATCTTCGTTATCCTCCAGGTCGACGGACCGGTACACGTGAGCCTGGAAGCAGTC
CTCGGCGTCGGGCAGCCCGCTGGAGAGATCGGTGCACGTCACGCTGGCA

Homology of Contig U35_34732 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None