- Probe CUST_41063_PI390587928
- Source Contig U35_22763
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41063_PI390587928 | Hv_44K_v2 | GCATACTTACGGCAGACCAGCTGATTATATTTGATTAATAACTCAGAATCGTTTTCTTCA | 475 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.459 | 1.675 | 1.505 | 0.924 | 0.175 | 0.169 |
| Raw | 2878.837 | 5163.200 | 4005.887 | 3762.770 | 271.911 | 277.727 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK248723.1 | 586 | 2e-23 | 508 - 565 | 100 | 58 / 58 | plus | ABC16716 |
| MLOC | MLOC_51996.1 | 910 | 2e-23 | 608 - 665 | 100 | 58 / 58 | plus | ABC16716 |
| JLOC1 | JLOC1_33256.1 | 910 | 1e-23 | 608 - 665 | 100 | 58 / 58 | plus | |
| Harvest21 | ABC16716 | 550 | 3e-25 | 476 - 535 | 100 | 60 / 60 | plus | ABC16716 |
| Harvest35 | U35_22763 | 550 | 3e-25 | 476 - 535 | 100 | 60 / 60 | plus |
Contig Sequence (550 bp)
>U35_22763 550 Hv_44K_v2 CCCCAGCGAAAACTTCCAAGCCGCCAAAGGCGATGGCTGCGTCCGCCCCTCTCGCCGGGG TCGCGCTCCTCCTCCTCCTCCTCCATGCCGTCCATGGAGGAGGCATGGCCGGGATTGCTA GCACGGGCGGAGCGAGGATGAGATCATCGGAGGGGTACGCGCCGGTGCGGACCGTGGTGT ACCGGTCGGCGGCGTCGGAGGCGTTCGAGCCGTTCCAGCTATGCATGGGGTGCCGGTGCT GCCCGGCGGGGAACAACAGCTCGTCATGCGTGGACACGCAGTGCTGCTACGGCATCAACT GCAACATCCCCGGCAAGCCGTTCGGGACCTGCGCCTTCACCCCACGCACCTGCGGCTGCG GCGGCACCGCCACCGGCGGCGGCGGCAACTGCACCTCTGCGCCCGCCCCGCCTGCGAGCT AGCTTATAGGACCCGATTGATTTTGATCAATTGGTCCGATCCACTTACGAGTATTGCATA CTTACGGCAGACCAGCTGATTATATTTGATTAATAACTCAGAATCGTTTTCTTCAAAAAA AAAAAAAAAA
Homology of Contig U35_22763 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |