barSeed - Barley Seed Development Database

Probe CUST_4105_PI390587928

Source Contig U35_28759

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4105_PI390587928	Hv_44K_v2	TTTGTGCGTGTCTGAACCAAGTTGCAACTTACTTTTGTTTAGGTCGATATATTTAGAGAC	439	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.974	0.813	0.720	0.730	1.345	1.198
Raw	2.794	2.856	2.570	5.815	2.997	2.989

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81476.1	1429	2e-24	631 - 690	100	60 / 60	minus	ABC05343
Harvest21	ABC27798	679	3e-25	440 - 499	100	60 / 60	plus
Harvest35	U35_28759	679	3e-25	440 - 499	100	60 / 60	plus

Contig Sequence (679 bp)

>U35_28759 679 Hv_44K_v2
GGTTCGTATACAACACTTCCAGTGCACTATTAACCTCGATTCCACTCTGTATATGAAGTG
TTTGATGGACGACAGACACAGTTCATATTAGCTACGAAGGTGAATATTGTGATTATCCAC
TGCCTACCCAATAGGAAATGGGTGAACTGGGTATGTGCAGTTGGCACCATCAGGTCATTA
AAGTTTGGATGTGGGCATTGGTTACCTAACTTTACCTGACGACAACTCTAGCTCGGGTTA
GTCCATTTGATGAGTTGCACTTGGATATCATTAGTTTGCACTGAATTCAGTATCACCTGT
ACACAATAGCTTCCTCCAATATGTGCTTGTTATTCATCCTATACATGTATTTCTGTTTAT
ATAAAGGTGACTTTGCTATACAGGTCCTGTCACTTCTGTTAAGTTTTTAACATGCAGTAT
TTCTGTTGAAATCAAGTAGTTTGTGCGTGTCTGAACCAAGTTGCAACTTACTTTTGTTTA
GGTCGATATATTTAGAGACGCTGCAAATCTTATGGTGAACTTTGTTGATGAAATTCGAGC
GCAAGGTTTTGAGTTGGAGTACCTGAATATCGGAGGTGGCTTGGGGATAGACTACCACCA
CACGGGTGCAGTCTTGCCTACACCTATGGATCTTATCAACACTGTCCGGGAATTGGTCCT
CTCACGGGATCTTACTCTC

Homology of Contig U35_28759 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None