barSeed - Barley Seed Development Database

Probe CUST_41045_PI390587928

Source Contig U35_10793

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41045_PI390587928	Hv_44K_v2	AGGCAAGAAGCTGGGGCAGGGCCAGTTTGGCACCACCTACAAGTGCGTCGAAAAGGCCAC	401	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373165	3105	2e-24	482 - 541	100	60 / 60	plus	ABC05771 ABC10960
MLOC	MLOC_77271.1	2460	2e-24	577 - 636	100	60 / 60	plus	ABC10960
JLOC1	JLOC1_51536.1	2494	8e-25	577 - 636	100	60 / 60	plus
Harvest21	ABC21592	475	3e-25	402 - 461	100	60 / 60	plus
Harvest35	U35_10793	476	3e-25	402 - 461	100	60 / 60	plus

Contig Sequence (476 bp)

>U35_10793 476 Hv_44K_v2
CAGCCAATCCCCGAGTCTCCACGCCGCCGCATGCCGTCGTTGCTGCCGCCGTTTGCCTAT
GCCTCTGCCGCCCCCATCGCCGGCGCGATGGGGAACACCTGCTCCGGCCCCAGCGCCACG
CCGGATCGCCACGGATTCTTCAACACCGTCGCCGTCGCCGTACTCTGGCGCCCCGGCGCC
GCCCGCGCCGAGCCGGCAGTCCCACAGCCCAACTCCTGCCCCTCCATATGCTCCTCCACC
TCGTCCGCGGCCCCCGATCTCGAGACCATCGACGACTCCGACCTCTCCTCTCCCTCCTCC
AATCCTAACAAGCCCAAGGTAAAGCGCGTCCAGAGCGCCGGCCTCCTCGCCGAATCCGTC
CTCAAGCGCGACTCGGAGCGCATCAAGGACCTCTACACCCTAGGCAAGAAGCTGGGGCAG
GGCCAGTTTGGCACCACCTACAAGTGCGTCGAAAAGGCCACGGGGAAGGAGTTCGC

Homology of Contig U35_10793 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None