- Probe CUST_41041_PI390587928
- Source Contig U35_10796
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41041_PI390587928 | Hv_44K_v2 | ATGATGAATTGAATCAATTCATCCGGGCCTGAATGGTCAAAGATTGGAACATGCAAAAAA | 325 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.281 | 1.885 | 1.970 | 1.247 | 0.313 | 0.312 |
| Raw | 52.403 | 122.976 | 108.850 | 102.742 | 9.447 | 10.427 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_23816.1 | 1554 | 9e-22 | 1244 - 1298 | 100 | 55 / 55 | plus | ABC21644 ABC36716 |
| JLOC1 | JLOC1_16423.1 | 1370 | 5e-22 | 1240 - 1294 | 100 | 55 / 55 | plus | |
| Harvest21 | ABC21644 | 396 | 3e-25 | 326 - 385 | 100 | 60 / 60 | plus | ABC21644 |
| Harvest35 | U35_10796 | 396 | 3e-25 | 326 - 385 | 100 | 60 / 60 | plus |
Contig Sequence (396 bp)
>U35_10796 396 Hv_44K_v2 CGCCTCCCAAGTTTCTTTCTGAAGACGCACGACTTCCTGCAGCCGCTGGAGAAGCCGGCG GCGTCGGCACCGTCCGGCGCGGACAGGCAGCAGCAGCAGCGGCGGCCAGGAAGAACGGTA ACGTGCTCCGGAGGATCAGTGGAATGTGGAAGAAATGAGCTGATCGCCGGTCCAACTGAT ATCAGTGGAGTAGTAGCGTGGCTTGATCGTAGGGATCGAGTTGTTCATTTTCTATCGCTT GTAAAATTGTTTTGCCGGTTCTCGTGGTGTAAAAACATAGGAGTGATTGTACTGAACGTG TTCAAAGATGTATCATATGCGGTATATGATGAATTGAATCAATTCATCCGGGCCTGAATG GTCAAAGATTGGAACATGCAAAAAAAAAAAAAAAAA
Homology of Contig U35_10796 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |