barSeed - Barley Seed Development Database

Probe CUST_4103_PI390587928

Source Contig U35_16781

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4103_PI390587928	Hv_44K_v2	CATGGTGCAGTTCAACTCTGTTGACGAAGGCTTTTCATTTGTATGCCATATAAGAAAAAA	3154	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.467	1.550	1.046	0.745	0.220	0.319
Raw	357.958	593.393	349.355	393.651	40.030	64.086

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_45547.1	2411	1e-22	2316 - 2371	100	56 / 56	plus
Harvest21	ABC05973	2885	3e-25	2822 - 2881	100	60 / 60	plus	ABC05973
Harvest35	U35_16781	3218	3e-25	3155 - 3214	100	60 / 60	plus

Contig Sequence (3218 bp)

>U35_16781 3218 Hv_44K_v2
TGATGAATGGCTACTGGATGGTTTGGCTGGTTTTCTTACCGACCTTTTTATCAAGCGTTA
TCTTGGGAATAATGAGGCACGCTATAGGCGTTTCAAGGCCAATTGCACCGTATGCCAGTT
CGATGTCAGTGGTGCAACTGCTTTGGGGTCTCCTGATGCTTCAACTGATCTGTATGGAAC
TCAAGCACTTGGCTCACATGGGAAAATTCGTTCATTGAAGGCAGTGGCCGTTCTTCAAAC
ATTGGAGAAACAGATGGGGCCAGACTCTTTTCGAAAGATTCTGCAGATGATAGTAGCTTC
AACTCGTGCCTCGAGGACACTAAGCACGAAAGAGTTTAGGCACCTCGCGAATAAGGTTGG
CAATCTTGAACGTCCTTTCCTCAAAGAATTCTTTCCACGGTGGATTGAATCTTGTGGATG
CCCGATTATGAGATTGGGAATCTCGTATAGCAAAAGGAGAAATTTGGTCGAATTGGCTGT
TTCACGGGGTTGCACAGCAAAAGCTGATCCAGGTTCTGATAATCACGTGAATGGTGATAT
TCAAGAAGGTGCAACTGGATGGCCAGGAATGATGAGTGTACGTGTTCATGAAACTGATGG
AGCGTATGATCATCCGATTCTGCCAATGGCTGGTGAAGCGTTGCAGGTGGTGGAATTACA
GTGCCATTCCAAATTAGCAGCAAAGCGTTTTCAGAAAACCAAAAAGGGCTCCAAGCCTGA
TGGTTCTGATGACAACGTAGATGCTTCAACTCAAGAGAATCGCACAAGCATGGATTCCCC
TTTACTATGGATCAGAGTGGACCCAGAAATGGAATACCTTGCTGAAATCCATTTTCACCA
GCCTATTCAGATGTGGATCAATCAATTGGAGAAGGACAAAGATGTCATTTCGCAGTCACA
GGCAATAACTGTTCTGGAGAAATTACCTCAGCTCTCTTTTGCTGTGATTAATGCCCTCAA
TAATTTCCTAAATGATACCAAGGCCTTTTGGAGAGTTAGAGTTGAAGCGGCATATGCATT
AGCTGTAACTGCATCAGAGGACACGGATTTAGCTGGGCTTCTTCATCTGGTTAAATTCTA
TAAAAGCCGCCGGTTTGATACTGATATTGGATTACCCAGGCCAAACGACTTCCATGATAT
TCCAGAATACTTTGTTCTCGAGGTAATGCACTGAGGCAATTCCTCATGCAGTAGCTCTTG
TTAGATCATCAGATAAGAGCAGCCCGAGGCAAGCTATTGAATTTATTCTTCAGCTTCTAA
AGTATAATGATAACAACGGAAATGTATACTCTGATGCCTACTGGCTAGCTGCAATGGTCC
AGGCAATAGGCGAAGTAGAATTTGGCCAGCAGGGCATAGGCCTCCTATCCTCTCTTCTGA
AGCGTATTGACCGACTCCTGCAATTTGACAACTTTATGCCTGGTTACAATGGGGTTTTGA
CTGTCAGCTGCATTCGGGCTCTTGCACGTATAGCGGAGAGGGTATCATCTTCCATTTGGC
TTGATCGTATTTGTGAATTAATTGCCCCTTTCCGTAGCATGGATAAACCATGGAAAGTCC
GAATAGAAGCTAGCAGGGTTCTTCTTGATCTTGAGCTTCACCATAAAGGGCTAGATGCAG
CTCTCTTGTTGTTCTTGAAATATACAGATGAAGAAAGATCTTTGCGAGGTGGAACAAAGT
TGGCTGTTCATGTCTTGCGCATATGCCAAGCAAATATTGAATCTAACCTTACTGATCAGA
TAAAAGTACCAACACTCTTTGGTCTCCTTCACCTGCTCAGTAGCAAAAAAGCATACAACA
ATGTCCTCCTTCGCCATAATGTGTTCTGCATTTTGCAAATTGCTGCTGGAAGGCCTCCAA
CACTGTATGGAGTTCCAAAGAATGTCGCCCCATCTCCACTGGTCCAGGAGATATCCGTTG
ATCAGCATACTAAAGCTGATTCCTCGGTTCCTCAACTATCAAGGCCTCAAGAACCTTCCA
CTAGCACTCCTAGTGTCCGTGAGGTCTTACCTGCCACTGTACCTTCCAAAGATGCTGATA
ACATATCTAACTGTAGCGAGCGAAGGAATGTTGTCAAAATTAGGGTTAGGCGTACTGCAT
CATCCAGTAAAGGAGATGGTGCTGATCACAGGGATCATTCACATGGTGGAAGAAATGAAA
ACGAAGCGGGTCCTTGTAGTTCTATGTCGGTGGATGCCCCTATGGTTGGAGTGCCAAATG
AGCCACCGACCACAAGTAATCATAATATTGAGGAGCAGAACTCATGTCATGACCGTGAAT
CAAGGATGTCTGCAAGCGTGAGCAATGCCAAAGTAATGGACACGTACGAAATTTCCAAGG
AACTACAGTGTACAGCCGATTCAAGGATAGATGCCGCTGATTCAAGGTTACTGGTGCCCA
AGAATGAGTTCTCTCCTGTCGTCAATGTGCGGGAAGATGTGGATAAGCCTGGCAGTCAGC
TTGAAGGAGTATCCACCAGCTATGTTGGAACCCAAGCTCCAGATTCCGTCAACGGGCTGC
ACTCTAAAGAGAAGAAGAGAAAGGACAAGAAAGATAAGAAGCGGAGCCGGGACGAAAAAC
GAGACAAGAAAGATGACCCCGAGTACCTGGCGAAAAAGCGTCTTAAGAAAGAGAAGAAAA
AGATGGAGAAAGAGTTAGCCCGAAAGCAGAAGGAAGGTGACAGAGCTTCTTCTCAGCAAG
ATATAGTGAAACCCTCCGACTCACAAGGAACTGTGGCAGCAACGCCACCAGCCCCAGAGC
GAAGCGCCGAGCCCCAGGTTTCAAACAAGGATGCTGCGGTTGACAGGACACCGCCGCCGA
CCAAGAAAATAAAGATCAAATTCAAGCCCTTGAAGAAGATAGGCTAATAAGCGGAGTTGT
AAGAGATCCTACCTAGATGGTCGTCGCGCCACTTTTTATGAGGATTGAGTTGCTGTACAG
TAGAAAAGAAACAGGCGAGGGGTAGATTGTACGATGACATAATGAGCAGCCAGATTTTTT
TTTGTGAATGGCTAATGTATCTTGTAAAAACACAACCGCCCCAGTAATTTCTGGGAGTAA
TTCAGATGAAGCTGTAGGGGGTAAGCAACTTAGGGCCAAGGCGAGCGCCCCATTATGTGA
TTGCTCCATTGTCAAGTCTCCCTATCGTGGATGCCATGGTGCAGTTCAACTCTGTTGACG
AAGGCTTTTCATTTGTATGCCATATAAGAAAAAAAAAA

Homology of Contig U35_16781 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os09g24440.1	1538	protein\|expressed protein
Brachypodium v1_2	Bradi4g29947.1	864
Arabidopsis v10	AT1G73960.1	1390	\| Symbols: TAF2 \| TBP-associated factor 2 \| chr1:27805173-27814433 REVERSE LENGTH=1390