barSeed - Barley Seed Development Database

Probe CUST_41029_PI390587928

Source Contig U35_22776

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41029_PI390587928	Hv_44K_v2	GGACAGTTGTCAATGAAGAAAAAGAGGACGATGTCAATGCGTTGCATGTTCAGACCAAGC	1294	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56326.5	2318	2e-24	1427 - 1486	100	60 / 60	plus	ABC16810
MLOC	MLOC_56326.1	9583	2e-24	8224 - 8283	100	60 / 60	minus	ABC04501 ABC08038 ABC16810 ABC34614
MLOC	MLOC_56326.2	2255	2e-24	871 - 930	100	60 / 60	minus	ABC16810 ABC34614
MLOC	MLOC_56326.4	2152	2e-24	865 - 924	100	60 / 60	minus	ABC16810 ABC34614
MLOC	MLOC_56326.3	1973	2e-24	865 - 924	100	60 / 60	minus	ABC16810 ABC34614
MLOC	MLOC_56325.2	6805	2e-24	5318 - 5377	100	60 / 60	minus	ABC04501 ABC08038 ABC16810 ABC34614
JLOC1	JLOC1_36418.6	2982	8e-25	1359 - 1418	100	60 / 60	plus
JLOC1	JLOC1_36418.5	2720	8e-25	1188 - 1247	100	60 / 60	plus
JLOC1	JLOC1_36418.4	2849	8e-25	1226 - 1285	100	60 / 60	plus
JLOC1	JLOC1_36418.3	2799	8e-25	1176 - 1235	100	60 / 60	plus
JLOC1	JLOC1_36418.2	2683	8e-25	1060 - 1119	100	60 / 60	plus
JLOC1	JLOC1_36418.1	2843	8e-25	1220 - 1279	100	60 / 60	plus
Harvest21	ABC17289	1417	3e-25	1295 - 1354	100	60 / 60	plus
Harvest35	U35_22776	1417	3e-25	1295 - 1354	100	60 / 60	plus

Contig Sequence (1417 bp)

>U35_22776 1417 Hv_44K_v2
GGGAGAACGTCTACGCGGGGGCTGCGCCGCCGTCCGAGGACCGCTACCGCTCCCCTTCCT
CCGCCGCCAAGCCGCTCGGAGACGTCACGCCCACGCTCAACCGTGTCCTCCCGCCGCGGC
CCCTCAAGCGGAAGCTCGACGTCTCCCCCGCCGTGGGCCCGCGGCCGCGGCCGGAAGCGG
ACGCGTCCGACTCCGGGGTCCAGGTACCGCCTAGGGTTTCGTGCCGGGATCTGCGTGTCT
GCTGATTTGCTCTGGTTACATTGCATTGCATTACAGGTTGTGGTGAGGATACGGCCCCCG
TGCTCGGTGGAGGGGGAGGAGGCTCCTGGCTCGTGCCTCTGCAAGACGTCCACCAACTCT
GTCGCCATCCAGGGCCAGAGCTTCACCTTCGACGCCGTCGCCGACGCAGCCTCTACGCAG
GAAGATTTTTTCACGCTTGTTGGGCCACCGCTCGTTGAGAATTGCTTGTCGGGGTTGAAC
AGCTCGATTTTTACCTATGGCCAGACTGGGAGTGGAAAGACATACACAATGTGGGGCCCT
CTCTCTGCAATTTCAGGAGACTCAATGGCCTGTGAGAGGGGACTGGCACCCCGTGTTTTT
GAGCACTTGTTCTCCCGGATTAAACAAGAACAGGGGAAGCACAAAGACAAGGAGCTAATT
TGCAGTTGTACCTGCTCTTTTCTCGAGATCTACAACGAACAGATAACTGATTTGCTAGAC
CCCATGCAAAAAAATCTCCAGATAAGAGAGGACGTTAAAACTGCTTGTGTTTATGTTGAA
TCGTTGACAAAGGAGTCTGTTTTCACCATGAAGGATGTAAATCAGCTGTTGGTGAAGGGG
TTGGCAAACCGGAGAACAGGGTCAACAAGTGCCAATGCAGACAGTTCACGCTCTCACTGT
GTTTTTACATGTGTAGTCAAATCTGAATCAAAGAATCTTGGAGATGGCTCAAACATCATT
AGAATGAGCAGGATGAATTTAGTAGATCTTGCTGGATCTGAGAGGCAAAAGCTAACCCAT
GCAGCTGGGAATCGCCTAAAAGAAGCAGGAAATATAAACCGGTCACTTTCAGCACTTGGA
AACTTGATTAATATACTAGCAGAAATTTCACAATCGGGAAAACAATGGCAGCATGTTCCG
TATCGCAATTCAAAGTTAACATTTCTATTACAAGAATCCCTGGGTGGTAATGCAATGCTT
GCAATGATTTGCACTGTTTCTCCGTCAGAAAGCTGTAAGAGTGAAACCTTGAGCACCCTA
AGGTTTGCTCAACGTGCGAAGGCTGTAAAACACAGGACAGTTGTCAATGAAGAAAAAGAG
GACGATGTCAATGCGTTGCATGTTCAGACCAAGCTTTTACAGGATAACATTGCGGATGCT
GCTGATTGGGCTGAAGCAGAGAGTAAACGGATGACTC

Homology of Contig U35_22776 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g28850.1	1065	2e-119	protein\|Kinesin motor domain domain containing protein, expressed
Brachypodium v1_2	Bradi5g06640.1	1077	5e-121
Arabidopsis v10	AT3G23670.1	1313	2e-150	\| Symbols: PAKRP1L, KINESIN-12B \| phragmoplast-associated kinesin-related protein, putative \| chr3:8519290-8525055 FORWARD LENGTH=1313