- Probe CUST_41028_PI390587928
- Source Contig U35_22777
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41028_PI390587928 | Hv_44K_v2 | GCTGCGAAACCTGTAAAAGCTGTGAAACAAAACAGCTTTAATTGCAGCATATAATAAAGT | 317 | GeneList: lightyellow MasterList: Transferase_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.105 | 0.423 | 1.850 | 1.892 | 1.245 | 1.427 |
| Raw | 7.539 | 53.227 | 202.883 | 309.098 | 73.187 | 91.714 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK369485 | 2776 | 7e-23 | 2704 - 2763 | 98 | 59 / 60 | plus | None |
| JLOC1 | JLOC1_38605.1 | 2710 | 2e-21 | 2580 - 2639 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_22777 | 414 | 3e-25 | 318 - 377 | 100 | 60 / 60 | plus |
Contig Sequence (414 bp)
>U35_22777 414 Hv_44K_v2 TGCTGGTGCCCACCGTGGTGGTCATGGCCGTGAACGTGGCCGCCATCGGCGCGGCGGCGG GCAAGGCGATCGTTGGGCGGTGGTCGGCAGCGCAGGTCGCGGGGGCGGCGAGCGGGCTTG TTTTCAACGTGTGGATGCTGCTGCTGCTCTACCCGTTCGCGCTCGGGATAATGGGGCACT GGAGCAAGAGGCCCTACATCCTGTTCCTTGTGCTGGTGACCGCGGTCGCTGCCACCGCGT CCGTGTACGTCGCACTCGCGGGGTCCTTGCTGTACTTGCATTCGGGGATAAAACTAGTTT AATTTTTGTCAAGTAATGCTGCGAAACCTGTAAAAGCTGTGAAACAAAACAGCTTTAATT GCAGCATATAATAAAGTTTACCTTGATGATTAAAAACAAAAAAAAAAAAAAAAA
Homology of Contig U35_22777 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |