- Probe CUST_41011_PI390587928
- Source Contig U35_22780
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41011_PI390587928 | Hv_44K_v2 | TGAGAATTTGGACTAAGTATTGTCGCTCATTGTTCGTCGCGATGTGGTAAGTTACGGATG | 602 | GeneList: darkred MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.039 | 1.661 | 1.813 | 1.214 | 0.409 | 0.350 |
| Raw | 309.211 | 782.728 | 739.432 | 758.894 | 88.564 | 85.958 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_12135.4 | 2292 | 2e-24 | 2193 - 2252 | 100 | 60 / 60 | plus | ABC20343 |
| MLOC | MLOC_12135.3 | 2301 | 2e-24 | 2194 - 2253 | 100 | 60 / 60 | plus | ABC20343 |
| MLOC | MLOC_12135.5 | 2182 | 2e-24 | 2110 - 2169 | 100 | 60 / 60 | plus | ABC20343 |
| MLOC | MLOC_12135.6 | 2182 | 2e-24 | 2110 - 2169 | 100 | 60 / 60 | plus | ABC20343 |
| MLOC | MLOC_12135.1 | 2267 | 7e-23 | 2211 - 2267 | 100 | 57 / 57 | plus | ABC20343 |
| MLOC | MLOC_12135.2 | 2267 | 7e-23 | 2211 - 2267 | 100 | 57 / 57 | plus | ABC20343 |
| JLOC1 | JLOC1_8126.1 | 2131 | 8e-25 | 1998 - 2057 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC20343 | 624 | 3e-25 | 537 - 596 | 100 | 60 / 60 | plus | ABC20343 |
| Harvest35 | U35_22780 | 690 | 3e-25 | 603 - 662 | 100 | 60 / 60 | plus |
Contig Sequence (690 bp)
>U35_22780 690 Hv_44K_v2 AACTCTGCATTGTCTACAATGCCAATCAGCAACTTCTACCGAAGCCCTGACATGTATGAC ACCATCGACTTCGCTATTGATGTTAAAACCTCAATGGAGAGCATCGCAGCTTTGAAATCC AGAATCAAAGGGTACTTGGAGAGCAAACCTACACGCTGGCACCCTATCCACACGGTAAAC CTGAAGGACATCTTGGACGTGAACAAGATCAACATGGCCCTGTGTGCCCAGCACACGATG AACTTTCAGAATATCCGGGAGAAGAGCATCAGGAGGTCTGAGCTTGTGATGGAGCTAAAG AAGATATTCGAGGAGATGGCCATTAGCTACCAACTTCTGCCTCAAAAGGTCGAGCTTAGC TATGTCGGCACAAAGCCGCTGCCCGTGAATGTTTCTCAAGGCAGGTAGAGCGTGGGGAAG ATTAAGAACTGATGATCCCGCCGTCGATGCAGCGGAGGTTGACGACTGATTTCTAGTTTA GTTTTGCAGTTTGTACCGGAGCTTTTATCATCCCTGTACATGCTTTGCGTTTGCGAGTTG CGTTTATCTGTACCGGATCACTGGATAATTGTGTGTCGCCGTCAGCAGCGTATGGGTTGA ATTGAGAATTTGGACTAAGTATTGTCGCTCATTGTTCGTCGCGATGTGGTAAGTTACGGA TGGACTTATTATTAAAAAAAAAAAAAAAAA
Homology of Contig U35_22780 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g10410.1 | 746 | 3e-64 | protein|uncharacterized mscS family protein, putative, expressed |
| Brachypodium v1_2 | Bradi1g46387.1 | 752 | 2e-70 | |
| Arabidopsis v10 | None |