- Probe CUST_41004_PI390587928
- Source Contig U35_22787
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41004_PI390587928 | Hv_44K_v2 | TGCTTGGTTTGGCACAGTCATATGATTTGGTCCAAGTTAGGCATTTGCATGTTCATCAAA | 452 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.278 | 2.038 | 1.322 | 0.615 | 0.177 | 0.235 |
| Raw | 728.660 | 1019.972 | 580.855 | 439.006 | 42.746 | 61.584 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_69909.1 | 3798 | 3e-22 | 40 - 98 | 98 | 58 / 59 | minus | None |
| JLOC1 | JLOC1_46355.1 | 3790 | 1e-22 | 3635 - 3693 | 98 | 58 / 59 | plus | |
| Harvest35 | U35_22787 | 526 | 3e-25 | 453 - 512 | 100 | 60 / 60 | plus |
Contig Sequence (526 bp)
>U35_22787 526 Hv_44K_v2 GGGCTGCGAGCGTGCCGAGGGGGGCGGCGTGGTCACGCCTGGACGAGGCCGCGCTGGCGG AGAACTACTACAACAGCCACCGTGAATCCAGGAGGAATGCTGCCCCGAGGCCCGTTGAGG ACGCCAGGGGCCTGAAGCTGATCCTGCTGCACAACAGCTCCTCCCTCTGCCCGCGTTCCG GCGACCAACTCCGTCGCTGAGAAGACGCCACTGCGTTGCCCTCCTGCTCCTGGTGACGCT GTCCTGAGCAGTTGGCACGGTTCTTTCAAGTAGCATGTGAAAAATGGCAGATACAAAACG CCTGGTAAACGAGTTCTTTGATCCTTGCAGTGAAACACGCTGTCTGTCTGATATGGTATG ATTGCCATGCCTGGTGACTGATGAGAAGTTGTGAACTGTGATGCAAGTTGGAAGACGAGA GAGAATGTGAACATGACAAAGTTTACGTTTATTGCTTGGTTTGGCACAGTCATATGATTT GGTCCAAGTTAGGCATTTGCATGTTCATCAAAAAAAAAAAAAAAAA
Homology of Contig U35_22787 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |