barSeed - Barley Seed Development Database

Probe CUST_40_PI415269222

Source Contig TA53986_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40_PI415269222	Hv_44K_v2	ACTTGAAAAATCTAGCGTTAATTTGTAACTGATGCTCCAGTGGAGAATTAAGATATGCAG	543	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376459	1746	7e-23	1680 - 1740	98	60 / 61	plus	ABC49967
MLOC	MLOC_59543.1	1499	7e-23	6 - 66	98	60 / 61	minus	ABC49967
MLOC	MLOC_59543.2	1479	7e-23	6 - 66	98	60 / 61	minus	ABC49967
JLOC1	JLOC1_38756.4	1603	4e-23	1433 - 1493	98	60 / 61	plus
JLOC1	JLOC1_38756.3	1583	4e-23	1413 - 1473	98	60 / 61	plus
JLOC1	JLOC1_38756.2	1385	4e-23	1215 - 1275	98	60 / 61	plus
JLOC1	JLOC1_38756.1	1102	4e-23	932 - 992	98	60 / 61	plus
Harvest21	ABC49967	652	1e-23	2 - 61	98	59 / 60	minus	ABC49967
Harvest35	U35_48322	652	1e-23	2 - 61	98	59 / 60	minus

Contig Sequence (606 bp)

>TA53986_4513 606 Hv_44K_v2
TCTTCTGCTCGCCTGTTTGATGCAATTGTTAGTGGATGTATCCCAGTTATAATCAGCGAT
GAGCTAGAGCTCCCTTTTGAAGGAATACTTGACTACAGTAAGATAGCATTGTTTGTTTCA
TCAACTGATGCTGTGCAACCTGGCTGGCTGGTGAAGTACCTAAGAGGCGTCGATGGCAAA
AGAGTCAGGGAGATGCAATCCAATCTTCTCAAGTACTCGAGGCATTTTCTTTATTCGAGT
CCTGCTCAGCCCCTTGGACCAGAAGACCTTACATGGAGAATGATTGCTGGCAAGCTGGTG
AACATCAAGCTGCATATTCAGCGGTCGCGGCGCGTGGTCAGAGAATCAAGAAGCGTATGC
ACATGTGAGTGTAGGGTCGGGAATACTACGAGGATGCTCTGAACCAGCTTTTTCTTTGTA
GTATTTTTCCAGTTCCCGTAACGCTGTAGCTCTTTTTTATTTTTGACGGGGACGCTGTAG
CTCTTCTTTACAAGTCATTGATATGAGTTTGCCCCACTGTTACACTCGTTTGTAAATTGC
ACTACTTGAAAAATCTAGCGTTAATTTGTAACTGATGCTCCAGTGGAGAATTAAGATATG
CAGTGA

Homology of Contig TA53986_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g59630.1	500	3e-69	protein\|exostosin family domain containing protein, expressed
Brachypodium v1_2	Bradi2g53000.1	496	6e-72
Arabidopsis v10	AT5G16890.1	511	1e-54	Exostosin family protein \| chr5:5551664-5554741 FORWARD LENGTH=511