barSeed - Barley Seed Development Database

Probe CUST_409_PI415269222

Source Contig TA47045_4513

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_409_PI415269222	Hv_44K_v2	TTCGCATACCATACACATCGCATCTGTCGCGTACAACACTGTTTTCCTTGGAGAGTTCAT	405	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59487.3	2820	2e-24	1619 - 1678	100	60 / 60	plus	ABC11464
MLOC	MLOC_59487.1	2771	2e-24	1563 - 1622	100	60 / 60	plus	ABC11464
JLOC1	JLOC1_38715.1	2894	8e-25	1563 - 1622	100	60 / 60	plus
Harvest21	ABC11464	1612	3e-25	406 - 465	100	60 / 60	plus	ABC11464
Harvest35	U35_4137	1954	3e-25	722 - 781	100	60 / 60	plus

Contig Sequence (984 bp)

>TA47045_4513 984 Hv_44K_v2
GATGGAGCATTACCAATCAAAGATGCAGTATCCTGTGTCATCACCAGGGGTCCAGAAGAA
CGAACCCTGTGAGGCCTTCAACAGCATAGCAGATAACGGCCTTGGCCTTGTGGACCCTGA
CAAAGTGTTCAGCTTCTACAATGAGCTCCACTCCTACCTCGCGTCTGCCGGAGTGGACGG
TGTGAAAGTAGACGTGCAAAACATTCTCGAGGCGCTAGGCAGTGGCCATGGTGGGAGAGT
GCTTCTGTCTAGGAAGTACCAGCAGGCTCTAGAAGCTTCCATCGCACGGAATTTCCGCGA
CAACGGTATAATATGTTGCATGAGCCATAACACTGATAACTTATACAGTTCAAAAAGAAA
CTCGGTTGTGAGAGCCTCTGATGATTTCTGGCCTAGAGACCCAGCTTCGCATACCATACA
CATCGCATCTGTCGCGTACAACACTGTTTTCCTTGGAGAGTTCATGCAGCCTGACTGGGA
CATGTTCCATAGCGTTCACCCAATGGCGGAATACCACGCCGCGGCACGGGCAGTCGGCGG
TTGCGCTATATACGTGAGTGACAAACCAGGAAGCCATGACTTCGATCTGCTGAGGAAGCT
TGTGCTTCCTGACGGATCGATCCTGCGAGCCAAACTCCCCGGGAGACCGACCAGGGACTG
CCTCTTCTCTGATCCTGCAAGGGACAGCAAAAGCATTCTCAAGATCTGGAACCTGAACGC
GCACTCCGGCGTGATCGGCGCCTTCAACTGCCAAGGCGCCGGTTGGTGCCGAGAAGGGAA
GAAGAACCTCATCCACGACGTGCAGCCCGGGACCATCAACCGGGCCGTCCGGGGACGGGA
CGTGAACCGCCTTCAGGAGGTCGCCGGCGATGGCTGGAACGGCGACGCGATCGTGTACTC
GCATGTAGCAGGAGAGGTGACCGTCCTGCCCAAGGACGCGGCGGTGCCGGTGACGCTGAA
GCCGCGCGAGTACGAGGTGTTCAC

Homology of Contig TA47045_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os08g38710.1	754	protein\|uncharacterized glycosyltransferase, putative, expressed
Brachypodium v1_2	Bradi3g39220.1	765
Arabidopsis v10	AT1G55740.1	754	\| Symbols: AtSIP1, SIP1 \| seed imbibition 1 \| chr1:20835507-20838707 REVERSE LENGTH=754