barSeed - Barley Seed Development Database

Probe CUST_409_PI390587928

Source Contig U35_9307

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_409_PI390587928	Hv_44K_v2	TGGGCTGGAGCTCTTGCTCGATGCCGTATTAGTTCGAGCAGATCTGCAAACAAGGTGGAG	167	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.330	0.395	0.526	1.834	1.814	3.027
Raw	3.972	8.034	11.395	64.696	22.189	40.585

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37682.1	743	2e-24	198 - 257	100	60 / 60	plus	ABC20400
JLOC1	JLOC1_24424.1	742	8e-25	200 - 259	100	60 / 60	plus
Harvest21	ABC20400	603	3e-25	168 - 227	100	60 / 60	plus	ABC20400
Harvest35	U35_9307	603	3e-25	168 - 227	100	60 / 60	plus

Contig Sequence (603 bp)

>U35_9307 603 Hv_44K_v2
GGAGATAAGGTGTACTTGACGGCGGTGGACGTCTGCGCCGTTTGTCGATCATTCTGAAAC
CCAAGCCGTCCCTCTTTTCCCCGCACACCACGCTGTTCCCGTTGTGAGAAGGCGCTTGCG
GCGGCGCTCGTTTTACACTGGCGGCGACGCGAAATAATGGAGGATTCTGGGCTGGAGCTC
TTGCTCGATGCCGTATTAGTTCGAGCAGATCTGCAAACAAGGTGGAGTTCGCCGACAACC
TTGAGCACCTAGATCCGGTTCCTCTGGTCTTGTTGCCCAACAACGGAGCGGGCCTTGCCG
TTCCTGAAGACTCGAATGCTGGGTCTGGCTGTCAGGCTGTGCTCAGCAGCTTTTGGGCGA
TGGGACTGTTAGAGAACGAGTTTGGGTCCGCCGCCGTCCGGATGGCTCTCCGACGAGGTC
GGTGCAGTCGACTGACAGAGTCAATCCAGAAGCACCTGGCTGGACAAAAACTTATGCACC
CCTACTCCTCCAAACTATCCTCCTGTAACTTGTTGAACTGTGGCTGCATCTTCGTCTCCG
CTCCGCAGCGTTTATAAGAAAAAAAGATGGGTTACTTTTGCTGNNNAAAAAAAAAAAAAA
AAA

Homology of Contig U35_9307 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None