- Probe CUST_40993_PI390587928
- Source Contig U35_47551
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_40993_PI390587928 | Hv_44K_v2 | CTGAGATGGTGAGCAAAGTTTGGAGTTTGCCGAGCCTACATGATCAGAAGATTACTCAGA | 473 | GeneList: yellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.746 | 1.434 | 1.094 | 0.717 | 0.666 | 0.758 |
| Raw | 141.380 | 156.838 | 122.149 | 110.673 | 40.191 | 49.897 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_14121.1 | 4805 | 2e-24 | 2494 - 2553 | 100 | 60 / 60 | plus | ABC13047 |
| JLOC1 | JLOC1_9624.1 | 4957 | 8e-25 | 2497 - 2556 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC48698 | 533 | 3e-25 | 474 - 533 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_47551 | 533 | 3e-25 | 474 - 533 | 100 | 60 / 60 | plus |
Contig Sequence (533 bp)
>U35_47551 533 Hv_44K_v2 GGTCGAGTCTGATGTGTTACATGGAGAGCATAGACTTAATAGGGATGGGGATGAAAGAAG CAGCAAACTGGCTAATACTTCCTCAAGCGACTCTCTGAAGGTTCAGATAGCCCCATCACA TGCAAGAATCGTCTTTTGCTTTCCTTCTGAGCCCTCATGGGACTTAGGTCGCCCGTCAAT CCTGGATAAGTTCCTTGTCATCGACCACACGACATCTCATAACTCAGCAGAAGCCTCTTC CCCACTTCGAAATGAAAGGTTTAATGATGTCCATCCAAGCACACAATCTACTTCACTCCA TTTGGCTACCGGGAACTTTGACATCTACTTGGTTAAACCCTCCAGTGCATTGGATGGTAT ATGTGCTTTAAGTAGGCAAACTTTCTCTGCTCTGAAGATTTTATCTGTGACTAGATCTGA TTATGAGGACTCCAGCATTAGAATGATCCGAAAAAACCACCCTGTAACTTGCCCTGAGAT GGTGAGCAAAGTTTGGAGTTTGCCGAGCCTACATGATCAGAAGATTACTCAGA
Homology of Contig U35_47551 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g15700.1 | 1920 | 4e-56 | protein|expressed protein |
| Brachypodium v1_2 | Bradi1g43830.2 | 1949 | 1e-83 | |
| Arabidopsis v10 | None |