barSeed - Barley Seed Development Database

Probe CUST_40990_PI390587928

Source Contig U35_47554

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40990_PI390587928	Hv_44K_v2	TATTCAGATGCCTACAATAATCAAGGGATCCATATCCATCCTGTCTGATGCAGGGCTAGG	205	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366459	2435	2e-24	1644 - 1703	100	60 / 60	plus	None
MLOC	MLOC_65575.2	1122	6e-24	722 - 780	100	59 / 59	minus	None
MLOC	MLOC_65575.1	1664	6e-24	766 - 824	100	59 / 59	minus	None
JLOC1	JLOC1_43160.2	1745	3e-24	873 - 931	100	59 / 59	plus
JLOC1	JLOC1_43160.1	1156	3e-24	288 - 346	100	59 / 59	plus
Harvest21	ABC48705	409	3e-25	206 - 265	100	60 / 60	plus
Harvest35	U35_47554	409	3e-25	206 - 265	100	60 / 60	plus

Contig Sequence (409 bp)

>U35_47554 409 Hv_44K_v2
TGCCGGTGTCGGGGTCCCCCTACGTGGCGCCGCGGAAGAAGGGCGCCGACGTGCCCGGGC
TGGAGGAGGCGGCGCACCCGATGCCGCCGGCGAGCGTGATGACCCGGCTCATCCTCATCA
TGGTGTGGCGCAAGCTCATCCGCAACCCCAACACCTACTCCAGCCTCATCGGCCTCGTCT
GGTCACTCGTCTCCTTCAGGTGGAATATTCAGATGCCTACAATAATCAAGGGATCCATAT
CCATCCTGTCTGATGCAGGGCTAGGGATGGCTATGTTCAGCTTAGGTCTCTTCATGGCTC
TGCAACCCAAGATCATCTCTTGCGGGAAGTCTGTGGCCACGTTCGCGATGGCGGTGAGGT
TCTTGACGGGTCCGGCGGTGATCGCAGCCACCTCCATCGCCGTTGGGCT

Homology of Contig U35_47554 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g44970.1	631	4e-81	protein\|auxin efflux carrier component, putative, expressed
Brachypodium v1_2	Bradi1g31530.1	646	7e-79
Arabidopsis v10	AT5G57090.1	647	3e-63	\| Symbols: EIR1, WAV6, ATPIN2, PIN2, AGR, AGR1 \| Auxin efflux carrier family protein \| chr5:23100765-23104456 FORWARD LENGTH=647