barSeed - Barley Seed Development Database

Probe CUST_40988_PI390587928

Source Contig U35_47558

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40988_PI390587928	Hv_44K_v2	GTTTGTGCCAAAGTACAACAATCTATGGGATAGGCAAAAGGCCCTTTTACGGTTTTGAAA	14	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6332.1	512	9e-22	418 - 475	98	57 / 58	plus	ABC07244 ABC07245 ABC07246 ABC48713
JLOC1	JLOC1_4120.1	880	5e-22	619 - 676	98	57 / 58	plus
Harvest21	ABC48713	600	3e-25	15 - 74	100	60 / 60	minus	ABC48713
Harvest35	U35_47558	600	3e-25	15 - 74	100	60 / 60	minus

Contig Sequence (600 bp)

>U35_47558 600 Hv_44K_v2
TTTTTTTTTTTTTTTTTCAAAACCGTAAAAGGGCCTTTTGCCTATCCCATAGATTGTTGT
ACTTTGGCACAAACTATAAAGAGCGGTATGCAGCCATGAGTGCAACTACTGGCATGCAAC
TACCAGCTCTGGATAGACAGATTCGGTAATTTAAATTAAAAAAAACGTACAAGAGAATAG
CTGAGCCAAGCCAATTTCCATGCATGTTCTTCTATGCACAAAATGGAAAGTGAGCATGTA
CGAAGTACAAGATTACCAATGCTAACTCTCAATCATCATAGGGAACATACAGATCGAATC
TACATGGCTGAAAAAACAAATCAATGCACACTTTTGTGCAATAAAACTGTTTGCCGATCT
ACTCGAGACCAACAATATCCTTGTTACGCCCGAACAGGTTACCTTCTAATGATGCACTTA
ATAGAGAACGTGTTTTGAAGTGATATGTCCATCTAGCAATAATTGAATCTCACTGCATGC
TTGCTTCTCTGTGGAACATTGAATTGTTTTTGCAGTAAAACTTATTTCAATTCAGGAGCA
TATAGTGCAGGGCAAGGTGACACGGTATGATCAGGCAAGCCACTTATGAACTCGTTAGCA

Homology of Contig U35_47558 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None