- Probe CUST_40987_PI390587928
- Source Contig U35_47559
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_40987_PI390587928 | Hv_44K_v2 | AGTAGTGACAGAGTAGAACGAGCCACGGATTCTGAATTTCTGATGCGCTTCGATTGATTG | 427 | GeneList: paleturquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.204 | 2.235 | 1.154 | 0.719 | 0.382 | 0.290 |
| Raw | 1884.347 | 2128.309 | 954.829 | 942.723 | 177.982 | 144.866 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_50917.2 | 602 | 2e-24 | 394 - 453 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_32481.1 | 608 | 8e-25 | 398 - 457 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC48714 | 521 | 3e-25 | 428 - 487 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_47559 | 521 | 3e-25 | 428 - 487 | 100 | 60 / 60 | plus |
Contig Sequence (521 bp)
>U35_47559 521 Hv_44K_v2 GAAAAAGCTGAATCATGGACACCACCGGCGCCGCCGCCGCCGCCGCCGCCGGAGGCGGAG GCAGCGAGGAGGAGGAGGACCGGGCCCGCCTGGCCGCCATCGCCGACAGACTCCAGGCCC GAGACTCGGTCCGGCTGTACACCTGGCTCTCGCACCGGTGCTTCTCCGACTGCGTCACCA CCTTCTACCGCAAGACGCTGGGCAAGCGCGAGGGGGACTGCGTCCGCGCCTGCGTCCGCA AGTACACGCTCGCCACCAACGCCTCCGCCGCCCGCTTCAACAAGCTCGCCGACCCCTCCG CCGCCGCCGCCGACGACGAGGACGGCTGATTCGTGCGACCCTGTGCTCCGATTTTTTGCC TGCTCTGGTTAGTCTTCTGCAGTCTGAGTTCCGATGATGTAGCGCTTGTGATGCCTGAAG AAACACCAGTAGTGACAGAGTAGAACGAGCCACGGATTCTGAATTTCTGATGCGCTTCGA TTGATTGCCGCTGTATCGGACCACACCACGGATTCGGAACT
Homology of Contig U35_47559 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |