barSeed - Barley Seed Development Database

Probe CUST_40972_PI390587928

Source Contig U35_47568

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40972_PI390587928	Hv_44K_v2	TAGCTTTACTACCATACTAGCGTGTGGGCGTGGGGTGCTACAGTGCTTGCTCGCTCCAGT	613	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.199	2.963	1.093	0.830	0.449	0.270
Raw	7341.467	7864.620	2717.790	3248.562	607.397	408.447

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358746	1152	3e-22	879 - 937	98	59 / 60	plus	ABC00079 ABC09962
MLOC	MLOC_78238.1	1029	3e-22	741 - 799	98	59 / 60	plus	ABC00079
JLOC1	JLOC1_52145.1	1024	1e-22	741 - 799	98	59 / 60	plus
Harvest21	ABC48725	687	3e-25	614 - 673	100	60 / 60	plus
Harvest21	ABC00079	999	5e-23	705 - 763	98	59 / 60	plus	ABC00079
Harvest35	U35_47568	687	3e-25	614 - 673	100	60 / 60	plus
Harvest35	U35_1187	1225	5e-23	900 - 958	98	59 / 60	plus

Contig Sequence (687 bp)

>U35_47568 687 Hv_44K_v2
GCACCCGCCTCCCACGCCGCGCCCACCGCCGACTCCGCCGTACGGGCCTCCCACGCCACT
GCCACCGCCTTACGTGCCGCCCACGCCGCCCTACACCCCGCCGTCGCCACCGTACATTCC
GCCAAGCCCGCCGTACGTGCCACCAACGCCACTGCCTCCGCCGTACGTCCCACCGACACC
TCCATACACTCCTCCCTACGTGCCGCCAACCCCGCCATACGTCCCGCCGTCGCCGCCCTA
CGTGCCACCGACACCGCCATACACGCCGCCGTACGTGCCGCCGCCGTCGCCGGGGAGGAA
GACGTGCCCGATCGACGCGCTGAAGCTGAACGCGTGCGTGGACGTGCTGAGCGGACTGGT
GCACCTGGTGATCGGGCGGGAGGCGCGGAGCAAGTGCTGCCCGCTGGTGCAGGGGGTGGC
GGACCTGGACGCGGCGCTGTGCCTCTGCACCACCATCCGGGCGCGGGTCCTCAACATCAA
CATCTACCTCCCGGTGGCGCTCCGGCTGCTCATCACCTGCGGCAAGCACCCGCCCAACGG
CTTCCAGTGCCCCACCGTCCTCGACGCCTAGCCTAGCCTAGCCTGCATGGCCGCTCTGGC
TCGGCTCTCGCCATAGCTTTACTACCATACTAGCGTGTGGGCGTGGGGTGCTACAGTGCT
TGCTCGCTCCAGTGCTGTGCGTGCCTG

Homology of Contig U35_47568 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g48160.1	240	4e-51
Arabidopsis v10	None