barSeed - Barley Seed Development Database

Probe CUST_40966_PI390587928

Source Contig U35_35596

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40966_PI390587928	Hv_44K_v2	TGCAACCCGGAATTGTGCTTATTCTGAAATCCTGATGTGTTTTTGTGAGTGTCTGCTTGT	647	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.403	3.388	1.095	0.789	0.452	0.403
Raw	51.688	84.940	23.467	27.740	3.603	3.790

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_35596	707	3e-25	648 - 707	100	60 / 60	plus

Contig Sequence (707 bp)

>U35_35596 707 Hv_44K_v2
CTCCTATAGGGCGAATTGGGCCCTTCAGAAAATGCTCGAGCGGCCGCTGGATCCCACCAA
ACAAAGATGGCCGTGTTCCTCAGCCTTGCCCTCTGAAACCTGGACCTGAACCCGGAAAAC
CCAAGGATGCAGAGTGCACTGATGTAGACGCCTATGTTTACTGTGTCAAGGTGATCAGGT
GGCTGGAATGCGAGGGCTACGTCGAGGCCAGCTTCAGGGTGAAGTTCCTGACATGGCTGA
GCCTGCGGGCTACCCGGCAGGAGAAGAGGGTGGTCAGCGTGTTTGTGGACACTTTCATCG
ATGATCCTGCGAGCCTCGCCGGCCAGCTAATCGACACCTTCTCCGAGATGATCTACGGCA
AGAGGCCGCCTATGGCGCCATAGATTCCCTGCGTGGAACTTCAGCGCAGTTGGGAACAGC
GGGTATCTTTTTTTGTGAACGGAAAGATAAGGGGAGTTTCTTCTTCTTTGGGGGAGAAAA
GAAGATAAGGGTAGTTGCCATCATCTGCTGTTAGATAACCATTGCACCAATTTCTTATTT
TGGAACCTTATGCACTGTATGACCGACAGTTATGTTTTGTTAACTGCCCCCTCCCCCTCC
ACTGAAAGTTAAACGCCTTATTAAACAGCATGAAGCATCGGGAAATTTGCAACCCGGAAT
TGTGCTTATTCTGAAATCCTGATGTGTTTTTGTGAGTGTCTGCTTGT

Homology of Contig U35_35596 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None