barSeed - Barley Seed Development Database

Probe CUST_4095_PI390587928

Source Contig U35_28760

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4095_PI390587928	Hv_44K_v2	GCTCAACGACTGCTGTCGATCGGAGCTAAACCTCAAGAGATGCCACATGCAGGTGCTGGT	327	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11893.6	2140	7e-23	982 - 1041	98	59 / 60	plus	ABC24772
MLOC	MLOC_11893.4	2435	7e-23	1092 - 1151	98	59 / 60	plus	ABC24772
MLOC	MLOC_11893.1	2040	7e-23	1265 - 1324	98	59 / 60	plus	None
MLOC	MLOC_11893.8	2195	7e-23	909 - 968	98	59 / 60	plus	ABC24772
MLOC	MLOC_11893.9	962	7e-23	162 - 221	98	59 / 60	plus	None
MLOC	MLOC_11893.7	1959	7e-23	1045 - 1104	98	59 / 60	plus	None
MLOC	MLOC_11893.5	2347	7e-23	1004 - 1063	98	59 / 60	plus	ABC24772
MLOC	MLOC_11893.3	2088	7e-23	1146 - 1205	98	59 / 60	plus	None
JLOC1	JLOC1_7931.2	2560	4e-23	980 - 1039	98	59 / 60	plus
JLOC1	JLOC1_7931.1	2696	4e-23	1116 - 1175	98	59 / 60	plus
Harvest21	ABC27799	387	3e-25	328 - 387	100	60 / 60	plus
Harvest35	U35_28760	387	3e-25	328 - 387	100	60 / 60	plus

Contig Sequence (387 bp)

>U35_28760 387 Hv_44K_v2
GAGGAATTCGGTACGAGGCGGCGGCTAAGGGCTGCCGGGCGCGCGCTACTGCCTGGGCGC
CGAGGGCGTGCTCCGCATCAGCCTCGGCTGCTTCCTCTTCTTCTTCGTCATGTTCCTGTC
CACCATGAAGACGAGGAAGGTGCACGACTGCCGCAACTCGTGGCACTCCGAGTGGTGGCC
GGTGAAGATCGTTCTCTGGATGGCCCTTACCGCCGTCCCCTTCTTCGCGCCCTCGCCGCT
CATACAGCTCTACCGTAAGGTGGCACATTTCGGAGCAGGGGCGTTCCTCGTGATCCAGCT
CATCAGCGTGACCAGGTTCATAACGTGGCTCAACGACTGCTGTCGATCGGAGCTAAACCT
CAAGAGATGCCACATGCAGGTGCTGGT

Homology of Contig U35_28760 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g05070.1	425	1e-73
Arabidopsis v10	None