barSeed - Barley Seed Development Database

Probe CUST_40948_PI390587928

Source Contig U35_47586

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40948_PI390587928	Hv_44K_v2	GACCTATCTTAATCTTTCAGGAAACAATTTCGCAGGAACTCTGCCTCTTCCCAGTTCTGA	604	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17680.1	4715	7e-23	2463 - 2522	98	59 / 60	plus	ABC20819
JLOC1	JLOC1_12210.1	4270	4e-23	2067 - 2126	98	59 / 60	plus
Harvest21	ABC48762	667	3e-25	605 - 664	100	60 / 60	plus
Harvest35	U35_47586	667	3e-25	605 - 664	100	60 / 60	plus

Contig Sequence (667 bp)

>U35_47586 667 Hv_44K_v2
TTGGATTTGAGAGCGATCCGACGCCTTTGTTTGACAGCCTCGAGGTGTTCGATGCAAGCT
ATAATGCGCTTACTGGCAACGTCCCGTCGTTCAACTTCATGATCTCCCTCAAGGTGTTGC
TTCTGCAGAACAATAATTTCTCGGGGTCCATTCCGGAAGCGCTATTTCGGGAGACCTCCA
TGATGTTGACTCAACTTGACCTCAGCTGCAACCAGCTCACAGGTCCAATTAGGCGTGTAA
CATCAGTGAATCTGAAGTACCTGAATCTGTCATGCAACAACCTTCAGGGAACTTTACCAA
TCACATTTGGGAGCTGTTCAGTGGTTGATTTGAGTAGAAACATGCTTTCAGGGAACATAT
CAGTTGTCCATACATGGGGAGATTATGTTGAGATGATTGATTTGAGCTCAAATAGATTAA
CAGGAACTTGGCCCGATCAGACTACCCAATTTTTGAGGCTGACTTTATTGAGGATTTCCA
ATAACTTGCTAGCAGGAGAATTGCCGACTGTTCTTGGAACCTATCCCGAGTTGATTGCCA
TAGATCTTAGTCTCAATCAGCTCCATGGAGCTTTACCTAAAAATCTCTTTACAGCAGTTA
AGCTGACCTATCTTAATCTTTCAGGAAACAATTTCGCAGGAACTCTGCCTCTTCCCAGTT
CTGAAAC

Homology of Contig U35_47586 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g20450.1	1042	6e-118	protein\|expressed protein
Brachypodium v1_2	None
Arabidopsis v10	AT2G27060.1	1020	1e-70	Leucine-rich repeat protein kinase family protein \| chr2:11551288-11554577 FORWARD LENGTH=1020