barSeed - Barley Seed Development Database

Probe CUST_40947_PI390587928

Source Contig U35_47588

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40947_PI390587928	Hv_44K_v2	GACAAATTTTGAAGTGCACCCACCGGTGGAAGCCGAATTTCCTTCTTCTGATGTCAATGA	525	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59852.1	2695	2e-24	888 - 947	100	60 / 60	minus	None
MLOC	MLOC_59852.3	3300	2e-24	1210 - 1269	100	60 / 60	minus	None
MLOC	MLOC_59852.2	3056	2e-24	888 - 947	100	60 / 60	minus	None
JLOC1	JLOC1_38980.4	3066	8e-25	2105 - 2164	100	60 / 60	plus
JLOC1	JLOC1_38980.3	2992	8e-25	2067 - 2126	100	60 / 60	plus
JLOC1	JLOC1_38980.2	3020	8e-25	2059 - 2118	100	60 / 60	plus
JLOC1	JLOC1_38980.1	2957	8e-25	1670 - 1729	100	60 / 60	plus
Harvest21	ABC48765	585	3e-25	526 - 585	100	60 / 60	plus
Harvest35	U35_47588	585	3e-25	526 - 585	100	60 / 60	plus

Contig Sequence (585 bp)

>U35_47588 585 Hv_44K_v2
GGTAGAGTCAGATGTCATGGCAGACATTGTAATTGAAACAATGAAGCATCTACCTGAAGC
ACCATTTCCATTAGCTAGAAATAAGAGTGTCCCTCAACCAAATTTGCAACCCCCCTCCAA
TCCCTTACCAGAGAACTTACCAGGCAATCTGCACTCTTTGCCCTTTACGGCACAATCAGT
ACCATCGGCAGATGGAACAGGCATTTCACCACCTGAGGTCCTTGTCATGCCTGGTGTTTC
TGATTCAAAGCGTGACCCAAGAAGAGATCCTCGTCGCCTTGATCCACGGCGAACAGTTGC
ACCTGCTGCTACTAGTCTCATACAGATGACGGTGGAAATGACCAGTGTGCACCAGACAAA
TTCTTTGTCAAATACACCTTCTCCTCTTCCCGGGAAGATTGAAAAATGTGCAGATTATTC
AGGAGACCCACCAAAAATTGAAGTTGAGGAACATCCATCTTCAAAGCCTCATCAGGCAAT
GGACAAAGGGAGATCCGAGTTGTTGGATGATGCCACGGAACTAGGGACAAATTTTGAAGT
GCACCCACCGGTGGAAGCCGAATTTCCTTCTTCTGATGTCAATGA

Homology of Contig U35_47588 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None