barSeed - Barley Seed Development Database

Probe CUST_40941_PI390587928

Source Contig U35_47595

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40941_PI390587928	Hv_44K_v2	GTGCGTCGCCGTGGTGCTCAAGGAGACGCTCCGTGCGCTGTGCTACCTTCACGAGCAGGG	385	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.295	0.274	0.973	3.609	7.185	9.049
Raw	3.809	5.024	22.727	102.561	95.517	138.524

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57740.1	2091	2e-24	658 - 717	100	60 / 60	plus	None
JLOC1	JLOC1_37469.1	2036	8e-25	615 - 674	100	60 / 60	plus
Harvest21	ABC48774	445	3e-25	386 - 445	100	60 / 60	plus
Harvest35	U35_47595	445	3e-25	386 - 445	100	60 / 60	plus

Contig Sequence (445 bp)

>U35_47595 445 Hv_44K_v2
GCTCATTTCCCGGCCGGCCTCCCACAGACATGGCAGACGACGCGGGGGCTGGCGGCGAGG
CCAAGTACCCGCTCAACCCAGAGTGCTACCGCCTGCTCTGCAAGATCGGGAGCGGCGTCA
GCGCCGTCGTGTACAAGGCCGCGTGCCTGCCGCTCGGCTCGGTGCCGGTGGCCATCAAGG
CCATCGACCTCGAGCGTTCCCGCGCCAACCTGGAGGACGTGTGGCGGGAGGCCAAGGCCA
TGGCGCTCCTGTCGCACGCCAACGTCCTGCGCGCGCACTGCTCCTTCACGGTTGGGAGCC
ACCTGTGGGTCGTCATGCCGTTCATGGCCGCCGGCTCGCTGCACTCCATCCTGGCCCACG
GGTTCCCCGACGGCCTCCCGGAGCCGTGCGTCGCCGTGGTGCTCAAGGAGACGCTCCGTG
CGCTGTGCTACCTTCACGAGCAGGG

Homology of Contig U35_47595 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g47470.1	535	7e-74	protein\|STE_PAK_Ste20_STLK.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed
Brachypodium v1_2	Bradi3g38300.1	554	8e-76
Arabidopsis v10	None