barSeed - Barley Seed Development Database

Probe CUST_40935_PI390587928

Source Contig U35_6502

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40935_PI390587928	Hv_44K_v2	ATTTCTTCAAGGGGCTGACCGCGCTCAAGGAAGTCTACCTCGACAACACCCTTTCGCGCC	545	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72162.2	3856	7e-23	326 - 386	98	60 / 61	plus	ABC08341 ABC44375
MLOC	MLOC_72162.1	3089	7e-23	329 - 389	98	60 / 61	plus	ABC08341 ABC44375
JLOC1	JLOC1_47997.1	3258	4e-23	409 - 469	98	60 / 61	plus
Harvest35	U35_6502	605	3e-25	546 - 605	100	60 / 60	plus

Contig Sequence (605 bp)

>U35_6502 605 Hv_44K_v2
CGGAATTCCTCGATTTTTGGTGGCCTACTGAAACCCTTCGTCTCCATCCCGAGACTTACT
CCCGTCTCTCTCTCTCCTCTCCCCTCCCCCTCCCTCGCCCCCTCCCCAATCCCTCTCCAC
CGCCGTCGCAATGCAGTCCCCCGCCGCGTCCACCGCGCGGCGGCGGTCGGCCGGCGCCGT
ACTGGCCCTGGCCGTGCTCCTGGCGGCCGTCGGCGTGGCGGCGTCGGCGGCGCAGGACGC
GGAGGCGATGCGGGCGGTCGCGAAGGCGCTGGGCGCGGACAAGCTCGCCGGATGGGGCGC
CGGCGAGCCCTGCTCTCCCAGGTGGCCCGGGGTGACCTGCGACTCCGGCGGCCGCGTCAC
AGCCATCCAGCTCAGGGACAAGCGCCTTACGGGGACGCTGGCGCCCGAGGTCCGCAACCT
CACCGCGCTCACCCGCCTCGAGCTCTTCGCCAACAGCCTCTCCGGCCCGCTGCCCTCGCT
GGCCGGCCTCGACTCGCTCCAGTACCTCAACATCCACGACAACGGCTTCACCTCCATCCC
GGCGGATTTCTTCAAGGGGCTGACCGCGCTCAAGGAAGTCTACCTCGACAACACCCTTTC
GCGCC

Homology of Contig U35_6502 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None