barSeed - Barley Seed Development Database

Probe CUST_40929_PI390587928

Source Contig U35_6509

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40929_PI390587928	Hv_44K_v2	TAACTGAGGGCAAACTTTCATTATTAACTAGGAACCATGCAGCTTTGTTAGATAATCGTT	865	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.702	4.740	1.294	0.644	0.819	0.729
Raw	55.939	66.455	14.806	10.500	3.574	3.754

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61544.1	1163	2e-24	1031 - 1090	100	60 / 60	plus	ABC14005
MLOC	MLOC_61544.2	1159	2e-24	1027 - 1086	100	60 / 60	plus	ABC14005
JLOC1	JLOC1_40219.1	1330	8e-25	1067 - 1126	100	60 / 60	plus
Harvest21	ABC14005	990	3e-25	866 - 925	100	60 / 60	plus	ABC14005
Harvest35	U35_6509	990	3e-25	866 - 925	100	60 / 60	plus

Contig Sequence (990 bp)

>U35_6509 990 Hv_44K_v2
TTAAATAATGCGCTCAGCGGCGGCTGCGCGTTCCCGTCGGTGGCATCCGCGCTGCGGTTG
CCGGCGGCCTCCCTCCGTACAAGCGCGGGCCGGAGCAGGACCAGGAGGCGGCGGACCAGT
TTAGCGCGCGCAGCCTCGGATGGCTCTGACGGCGCTGTCGCCGGCGCTGTAACGGAAGGG
GACGCAGGCGTCGGCGCCGGCGGGCAGCGCGGTGCCTCGGCCGAGCCGGCGGCGGAGAAG
CAGCAGCCCGTCGTCGATCCTAGGATCGAGAAGGAGCTCAAGAAGGCAGTTCAGAAGACC
GCGGCGACGTTTGCGCCGAGGGCGTCCACGAAAAGCAAGAACCCCGCTGTGCCCGGTTCC
ACTCTGTACACCATCTTTGAGGTCCAGGCGTACGCGTCCATGCTTGCCGGCGGCGCCCTT
TCCTTCAACCTCGTCTTCCCCTCCAGCGAGCCGGACATTTGGAGGCTCATGGGGATGTGG
TCTATCTGGATGTTCACTATACCTTCTCTGCGGGCCCGTGACTGCTCAAACAAGGAGAAA
GAGGCTCTGAATTATTTGTTCATCCTGGTCCCTTTGATCAACGTGATCATCCCATTCTTC
GTGAAATCATTTGCGGTTGTCTGGTCAGCAGATACGGTCGCCTTTTTCCTGATGTATGCA
TGGAAGCTTGGATGGCTGCAAAAGTCCGAGTGAAGACTATCCTCATTGAGGAGCATTCTA
CCTGCAACTTTTGCTGGTTTATTTTCTAGGGCACAGGTTGATCGAATTATTTCAAGATGT
AGCGTCTGTATAGCCCTTTAAAGTTTTGTGTATACCCATGAAGTACGGAGAAATGTGATT
TTGACATCAGATTGTTAAATAGATGTAACTGAGGGCAAACTTTCATTATTAACTAGGAAC
CATGCAGCTTTGTTAGATAATCGTTAAATATGTGTGTGCTTATTCTAAAAATTGTACCTA
ACTATTTGTGTATAAAAAAAAAAAAAAAAA

Homology of Contig U35_6509 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g33520.1	240	4e-93	protein\|expressed protein
Brachypodium v1_2	Bradi2g25800.1	237	4e-95
Arabidopsis v10	AT2G48070.3	201	1e-77	\| Symbols: RPH1 \| resistance to phytophthora 1 \| chr2:19662863-19663773 FORWARD LENGTH=201