barSeed - Barley Seed Development Database

Probe CUST_40926_PI390587928

Source Contig U35_6513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40926_PI390587928	Hv_44K_v2	CATTGAGGCATCCATTAAGCAAAGGTTAAGGGAAACAACGAGACATGTTTTAATACTGCA	856	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54205.2	2215	2e-24	2 - 61	100	60 / 60	minus	ABC13674
MLOC	MLOC_54205.1	2650	2e-24	29 - 88	100	60 / 60	minus	ABC13674
JLOC1	JLOC1_34877.1	2598	8e-25	2481 - 2540	100	60 / 60	plus
Harvest21	ABC13674	960	3e-25	857 - 916	100	60 / 60	plus	ABC13674
Harvest35	U35_6513	960	3e-25	857 - 916	100	60 / 60	plus

Contig Sequence (960 bp)

>U35_6513 960 Hv_44K_v2
CTCCTCACCGGCGGTCCGGTTGACGTGACATTTGCCAAATCTAACCCCAAGATCGGTGCA
ATTCTGTGGGCCGGCTACCCTGGCCAGGCCGGCGGGCTCGCCATCGCCAGGGTCCTGTTC
GGAGACCACAACCCCAGCGGCAGGCTGCCGGTGACGTGGTACCCGGAGGAGTTCACCAAG
GTGCCCATGACGGACATGCGCATGCGCGCCGACCCGGCCACCGGATACCCTGGCCGGAGC
TACCGCTTCTACCAGGGCAACGCCGTGTACAAGTTCGGCTACGGCCTCAGTTACTCCAAG
TTCTCCCGCCAACTAGCTGTCTCCGGGACCGGCAACAAAGCACCACGCACGAATCTGCTC
GCCGGCCTGACCGCGACGCCAAGTGCCGACGGCGGCGCGAGCTACGCCGTCGAGGAGATC
GGCGCCGACGGGTGCGAGCAGCTCAAGTTCCCGGCGGTGGTCGAGGTGCAGAACCACGGT
CCCCTGGACGGGAAGCACTCTGTGCTGATGTTCCTCCGGTGGCCCAACGCGACGGGCGGG
CGTCCGGTGAGCCAGCTGATTGGGTTCCGAACCCAGCATCTCAAGGCCGGCGAGAAGGCC
AGCCTCACGTTCGACGTCAGGCCATGCGAGCACTTTAGCAGGGCGAGGGAGGATGGCAAG
AAGGTGATCGATGCAGGCTCACATTTCCTCAAGGTCGGAAAAGACGAGCACGAGATCAGC
TTCGAGGCCTGAACCCGGAGCTCTATTCTGGTTCTGGCACGGGTAAAAGACCCAAGTGCA
GTGACGTTATTTTATCACTAGTTACACACAATTTAGTTATTGGTTTAAGTTATAAGTTCA
GTTGCCTCAGAATTAGCATTGAGGCATCCATTAAGCAAAGGTTAAGGGAAACAACGAGAC
ATGTTTTAATACTGCAGAAATATATATATATATATACTAATTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_6513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g19210.1	783	3e-136	protein\|beta-D-xylosidase, putative, expressed
Brachypodium v1_2	Bradi4g20197.1	762	2e-142
Arabidopsis v10	AT1G78060.1	767	2e-70	Glycosyl hydrolase family protein \| chr1:29349796-29352868 REVERSE LENGTH=767