barSeed - Barley Seed Development Database

Probe CUST_40917_PI390587928

Source Contig U35_6522

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40917_PI390587928	Hv_44K_v2	CTATGAGGGACATTTTGAGACAATCTATCTATACACAAGGCTCTGTAACTTGCATTTTTT	734	GeneList: darkslateblue MasterList: Transferase_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.846	2.522	1.228	0.803	0.309	0.344
Raw	777.854	1649.270	695.058	723.101	96.350	116.248

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251112.1	2462	2e-24	2354 - 2413	100	60 / 60	plus	ABC18520
MLOC	MLOC_73046.1	429	2e-24	294 - 353	100	60 / 60	minus	ABC18520
JLOC1	JLOC1_48614.1	243	8e-25	77 - 136	100	60 / 60	plus
JLOC1	JLOC1_48613.1	977	8e-25	842 - 901	100	60 / 60	minus
Harvest21	ABC18520	829	3e-25	88 - 147	100	60 / 60	minus	ABC18520
Harvest35	U35_6522	881	3e-25	735 - 794	100	60 / 60	plus
Harvest35	U35_5105	1473	3e-25	1248 - 1307	100	60 / 60	plus

Contig Sequence (881 bp)

>U35_6522 881 Hv_44K_v2
CACGCGTCCGGGGGCTTCAAATGGGTTACTCGGTCTGTGGCTTCTGGGCCCTGAACAGCT
TCCCCACCTTTTACTATGTCATCATCCCTTCACTTTGCTTCCTCAGTGGCGTCTCTGTTT
TCCCTGAGATAACCAGCCCTTGGTGCATTCCATTCATATACGTCGTGGTAGCTGCATACT
CCTGGAGCCTAATGGAGTCGCTGCAATGTGGTGACACTGCTGTGGAGTGGTGGAACGCAC
AAAGGATGTGGCTCATGAGAAGGACCACCTCCTACCTCCTGGCGGCCATCGACACGATTG
GGGGAATGCTGGGCATCTCTGAGTCCGGGTTCGAGCTGACGGTGAAGGTGGACGAGTCGC
AGGCTATGGAGAGGTACAAGAAGGGGAAGATGGAGTTTGGGCCCATCTCAGGTATGTTTG
TGATCATCACCACGATCTCGCTGTTCAACCTGGCGTGCTTGGTGCTCGGGCTGGGCAGAG
TTCTGTTGCGCGAAGGCGCAGCAGGGTTGGGACCTTTGTTTCTGCAGGCTGTCCTCTGCG
TGGCCATAGTGATCATCAATGCCCCGGTCTACGAGGCCCTCTTCATCCGCAGGGACAGTG
GAAGCCTGCCTTATTTTGTCACCCTCGTTTCCCTTTGCTTTGTGTCGTCGCTCTGCCTAC
AGGCTACCTAGATATGAACTCGGTGCAGAAACGATGAACAGACGTGAATGTGGAATGTTG
GGCTTTGAGCCTTACTATGAGGGACATTTTGAGACAATCTATCTATACACAAGGCTCTGT
AACTTGCATTTTTTTGCACAGTCAAAAAAAAAAAGTGGTATTCTCTAAACCTACATGATT
AGCAACTAAAGAATCATTTTTTTCCAAAAAAAAAAAAAAAA

Homology of Contig U35_6522 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g49332.3	430	7e-92	protein\|CSLE2 - cellulose synthase-like family E, expressed
Brachypodium v1_2	Bradi3g56440.1	738	7e-94
Arabidopsis v10	None