barSeed - Barley Seed Development Database

Probe CUST_40905_PI390587928

Source Contig U35_6534

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40905_PI390587928	Hv_44K_v2	CTAGATTTTCGGATGAATTACAAGATGAATCGAGCAGATTCTGATGAACCTTGCAAAAAA	553	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.839	1.417	2.483	1.984	0.797	0.655
Raw	3266.690	8800.317	13073.517	16259.417	2285.997	2058.000

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4860.1	1778	7e-23	1652 - 1708	100	57 / 57	plus	None
JLOC1	JLOC1_3082.1	1415	4e-23	1314 - 1370	100	57 / 57	plus
Harvest35	U35_6534	624	3e-25	554 - 613	100	60 / 60	plus

Contig Sequence (624 bp)

>U35_6534 624 Hv_44K_v2
CGCCGCCGGCCCCCGCTCCTGCCCCCAAGGCGCCCGCGCCTGCTCCTCGCGCGCCAGTCG
CGGCGCCCGCACCTGCTACGGCACCGGCACCGGCCCCGGCGGCCCTGCCTCCGTCGCCAA
AGAACCACACCGCGCCACCGCCGAAGCCGGCCGGCGAGCCCGTGCGTGCGCCAACACCCG
TGGTGGAGACGCCGGCGGAAGAACCATGGGGGGAAGAGGAGCAGCCCCCTGCCGACGCGC
ACAAGAGCGGCGCCAGCGACTCGGAGCCGTGGAGCCTCGGCGCGGTGGTGGCGGTGGCCG
TGCCGGTCGTGGTGTTTCTGCTGTGGTGAGCAGTCTGTGCTTGGAATGAATGCCCGCTGT
TAGTGGCGCTGGATCCCGTGATTAGTGCTCGCGCTTACCAGGATGGAAACAGTGGTTAAT
GAGCGTGTTGTACGACGATGCTCATGTTTAGTCAAGGAGTGCATGGCTGTGTTTGAATTG
CTACTAGTAGTAGTAGTACTCGCGTTTAGCCAATTGATTGAGTAATTTATTTCTCCTTTG
CATGGACCAAGCTCTAGATTTTCGGATGAATTACAAGATGAATCGAGCAGATTCTGATGA
ACCTTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_6534 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None