barSeed - Barley Seed Development Database

Probe CUST_408_PI415269222

Source Contig TA37986_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_408_PI415269222	Hv_44K_v2	GCTCCTGCAGTGAAATTTCTATCTTTACTCTTTCTTGCCACATTGATGTTGTTTAGTACT	982	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.181	1.776	1.441	0.906	0.317	0.303
Raw	831.241	1924.654	1351.910	1340.355	164.517	172.224

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360522	511	2e-24	416 - 475	100	60 / 60	plus	ABC19503 ABC28834
MLOC	MLOC_73682.1	380	2e-24	44 - 103	100	60 / 60	minus	ABC19503 ABC28834
JLOC1	JLOC1_49057.1	361	8e-25	55 - 114	100	60 / 60	minus
Harvest21	ABC28834	169	3e-25	57 - 116	100	60 / 60	plus	ABC28834
Harvest35	U35_29522	169	3e-25	57 - 116	100	60 / 60	plus
Harvest35	U35_17513	1123	3e-25	991 - 1050	100	60 / 60	plus

Contig Sequence (1060 bp)

>TA37986_4513 1060 Hv_44K_v2
ACACTCGACACTCGTCAGTGGTCATAGTTCATCACTGCACAGCTCTCCCACTCCACTGCC
CTCACTCCCACGCCGACACTCGCCATAATGCGCCGCCTCCACCTCGCCGCCGCCGTCCTC
GCCGTCATCGTCCTCCCCCTCGCCGTCTCCGCGGCCGGGGGCAAAGCAGCGGCAGCTAAG
GCGCCCGCTGCTCCGCCGGCCCCGCCGAACATCACGGCGGCGATGGCCAAGGGCGGGTGC
AAGGCGTTCGCGGCCCTGGTGGCGGCCTCGCCGGACGCGCACTCCACGTTCCAGTCGGCC
GGGGACGGCGGCGTGACGGCGTTCTGCCCCAGCGACGACGCCGTGAGGTCCTTCATGCCC
AGGTACAAGAACCTCACCGCCGACGGCAAGGCGTCGCTGCTGCTGTTCCACGCCGTGCCC
GTGTACTACGCGCCGCGGAGCCTCAAGTCCAACAACGGCGTCATGAACACGCTCGCCACC
GACGGCTCGGCCAACAACTTCAACCTCACGGTGCAGAACGAGGGCGAGCAGGTGACCATC
AAGACGGACGCCTCCGACCACGCCGCGCGGGTCAGGTCCACCGTGTACGACAAGGACCCC
ATCGCCATCTACGCCGTCGACACGGTGCTCGAGCCGGTGGAGCTCTTCGAGCCGGCAGAC
TCCCCGGCGCCGGCGCCGGCTCCCGCCCCTGTCGCGGACGCGCCCAAGGCCCCCAAGAAG
CAGGCGCGCCACCGGCCTGTAGCGGACGCGCCCGGGCCGGCCGCCGAGGACGCGGCGCCC
GCCGACCAGAGGAAGAACTCTAAGAAGAGCGCCGCGTTCGCCGCCCCGTGTCTGCGATGG
GCCGCAGTCCTGCCGTTCGCCGTGGCCGTGGCCGCCGCTCTGGCTTAGCCAAAGGGTTGT
GGTGGATCTGTACGGGAGGTGGTGGTGGTGTGTCGGTGGATTGCGTTGCGCGTGTCCTTT
GTGTCTGTCGGTCAGTGCGTGTGCTCCTGCAGTGAAATTTCTATCTTTACTCTTTCTTGC
CACATTGATGTTGTTTAGTACTAAAAAAAATGATTGTGAT

Homology of Contig TA37986_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g38270.1	272	1e-88	protein\|fasciclin domain containing protein, expressed
Brachypodium v1_2	Bradi3g39010.1	269	4e-73
Arabidopsis v10	None