barSeed - Barley Seed Development Database

Probe CUST_408_PI390587928

Source Contig U35_9308

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_408_PI390587928	Hv_44K_v2	TAATGCTAAAGACAAGACTAACAGTGGCGATGTTAATGCACCGCTGAAGAGTTCCAGAGC	410	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_22256.1	3193	7e-23	539 - 599	98	60 / 61	plus	ABC19645
MLOC	MLOC_22256.2	3368	7e-23	926 - 986	98	60 / 61	plus	ABC19645
MLOC	MLOC_22256.3	4207	7e-23	495 - 555	98	60 / 61	plus	ABC19645
JLOC1	JLOC1_15428.3	3896	4e-23	202 - 262	98	60 / 61	plus
JLOC1	JLOC1_15428.2	4150	4e-23	462 - 522	98	60 / 61	plus
JLOC1	JLOC1_15428.1	4299	4e-23	605 - 665	98	60 / 61	plus
Harvest35	U35_9308	490	3e-25	411 - 470	100	60 / 60	plus

Contig Sequence (490 bp)

>U35_9308 490 Hv_44K_v2
AAAAAAAAAGGCCAAAACCTACTCGCCCTACCGCCTCATCCCCGAACCCTACTACCACCC
CGGTCTCCGTCGCCCCCGCCGCAGCAGCACGGGAACCTCGCCGCGGACGCCATGTCGTCG
CGGCTGTGCGTGAAGAATCTGCCCAAGGGCGCCGACGAGAAGCGGCTGCGGGAGGTGTTC
TCGCGGAAGGGCGAGGTGACGGACGCCAAAGTCATCCGAACCAAGGATGGAAAGAGCAGG
CATCTTGCATTTATTGGTTTCAGAACCAATGAAGAGGCAGCGGAGGCCCTCAACTATTTC
AACAATACATACATTGACACTTCTAAGATCACCTGTGAGATTGCTCGGAAGATTGGTGAC
CCTGATGCTCCTCGCCCTTGGAGTCGCCATTCTTTAAAAAAGCCAGAATATAATGCTAAA
GACAAGACTAACAGTGGCGATGTTAATGCACCGCTGAAGAGTTCCAGAGCCAAGGAAAGT
CTGCTGTTGT

Homology of Contig U35_9308 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g52200.1	905	9e-67	protein\|RNA recognition motif containing protein, putative, expressed
Brachypodium v1_2	Bradi5g21380.4	662	4e-67
Arabidopsis v10	None