barSeed - Barley Seed Development Database

Probe CUST_40899_PI390587928

Source Contig U35_6540

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40899_PI390587928	Hv_44K_v2	GTGCTTGTGTTGTCTCGATAATGTTACAGCTTTTGAGTGAAATTCAGTTGATATTTATGG	501	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.114	1.181	1.139	1.027	0.432	0.423
Raw	2734.453	4449.887	3808.700	5358.950	798.192	851.413

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70177.1	2346	2e-24	2252 - 2311	100	60 / 60	plus	ABC14451
JLOC1	JLOC1_46559.2	432	8e-25	341 - 400	100	60 / 60	plus
JLOC1	JLOC1_46559.1	2324	8e-25	2230 - 2289	100	60 / 60	plus
Harvest21	ABC14451	587	3e-25	502 - 561	100	60 / 60	plus	ABC14451
Harvest35	U35_6540	587	3e-25	502 - 561	100	60 / 60	plus

Contig Sequence (587 bp)

>U35_6540 587 Hv_44K_v2
GACGATGCGGGCGTCGCACATCCTGATCAAGCACGAGGGGTCCCGGCGCAAGGCCTCGTG
GCGGGACCCCGACGGCGTCGCCATCTCCGCCACCACCCGCGACGACGCCGCCGACCTCGC
CCGCGCCCTCCGCGACCAGATCGCCGCCGGGGAGCTCCAGTTCGACGCCGCCGCCCGCGA
CAACTCCGACTGCAACTCCGCCAAGCGCGGCGGCGACCTCGGTCCATTCGAGAAGGGCAA
GATGCAGAAGCCTTTCGAGAAGGCAGTGATTGCTCTGAAAGTGGGGGATATGAGCGATGT
GGTTGATACCGAGAGCGGGGTGCACATCATCTTGAGGACCGGTTGACAGCGTCCATGGGA
GTACTGTCAATCGATATGAGATTGGTTTGAAACATTGCGCGATCTCTTAAGCAGAGACCT
TTTGTTATTAACTTGCATTGTAACAGTGCTGACTGCAAAGCTACTACGGGATTGGTTGTA
TGCCAGGATTAGACGTCGGTGGTGCTTGTGTTGTCTCGATAATGTTACAGCTTTTGAGTG
AAATTCAGTTGATATTTATGGTTTAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_6540 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None