barSeed - Barley Seed Development Database

Probe CUST_40898_PI390587928

Source Contig U35_6541

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40898_PI390587928	Hv_44K_v2	CAGTCATGTGCTGTCAGGTTTTTCATTTAGAAATTGGACACAACTTTGGTAATGTTTCTC	989	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376803	1053	2e-24	939 - 998	100	60 / 60	plus	ABC01661 ABC13588
Harvest21	ABC13588	1072	3e-25	990 - 1049	100	60 / 60	plus	ABC13588
Harvest35	U35_6541	1072	3e-25	990 - 1049	100	60 / 60	plus

Contig Sequence (1072 bp)

>U35_6541 1072 Hv_44K_v2
GCCGCAGCTCGGCGAGAGAACAATGGCTAGCGGCGCGGAGGAGGAGGGGAGAGCGAGGCG
GCAGGCCGGCGAGGAGGATACGGACGAAGACGACGAGCGGCCGCAGCTGAGCGCGGCGGC
GGCGGGGGCGCTGCGGGAGTTCCTCGAGGAGCAGGGACGGCACGAAGGGGAAAAGGGGGG
AGGAGAAGGGGTGGAGCTGCTGGCGGAGGACTGGCGGCTGAGCCAGTTCTGGTACGACGA
GCGCACCGCTCGGGAGCTGTCGGAGGAGGTCGCCCGCCTCGCCTCCGGTCTTCCCGCCGG
CGGCAGCACCAGCGCTGCCGTGGCCTGCGTCGCGTGCCCGACGCTCTACGCCTACCTCAG
GAAGAGCAGCCCGGATGTGCCGGCGCGGCTGCTCGAGTACGACGAGCGGTTCGGGCAGTA
CGGCGACGACTTCGCCTTCTACGACTACAACCAGCCGGAGGCGCTGCCGCCGGCCATGAA
GCACGCCTTCCAGATTGTCGTCGCGGATCCTCCTTATCTGGTATGCGTATGCTTTCCAGA
CACTTTAATTTGCTTAGCTCCCGAGTAGAATTTACAGGTTTGACTAAATTGAGGGAGGAA
TGGCGATTCGTTGCTGGTATAGAGTCAGGAGTGCTTGGAGAAGGTTGCCAAGACGGTCTC
CTTTCTCGCGCAGCCTGAAGGCTCATTCCTGCTGTTGCTCACAGGGGAAGTTCAGAAGGA
CCGCGCACTGGAGCTCCTAAACGTGCGCCCCTGCGGTTTCAAACCTCAGCACTCGAACAA
ACTGGGAAATGTGTTCCGGCTGTTCACGAATTACGACCCGGTAGACAGACTTGGTGGCTG
GGATCGGAGCGATGGCGCCCCGGTTTAGCCATGCCAAGTTGTCCATGGCTCTGGTCGTTC
ATTACATATTTACATGCTTAGAAACTGGACATGTCTTGGGCAAGTACAGAGATGTCCATC
CTATGGATACTCTGATATGATGCATCTTTCAGTCATGTGCTGTCAGGTTTTTCATTTAGA
AATTGGACACAACTTTGGTAATGTTTCTCTTTGATAAAAAAAAAAAAAAAAA

Homology of Contig U35_6541 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g53890.1	242	2e-109	protein\|N2, N2-dimethylguanosine tRNA methyltransferase, putative, expressed
Brachypodium v1_2	Bradi1g08530.1	250	7e-117
Arabidopsis v10	AT3G58470.1	248	2e-69	nucleic acid binding;methyltransferases \| chr3:21627070-21628507 REVERSE LENGTH=248