barSeed - Barley Seed Development Database

Probe CUST_40894_PI390587928

Source Contig U35_6545

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40894_PI390587928	Hv_44K_v2	CAAAAGGATGCTAGATAAAGGCATGTTTCTGTTTGGGTTCATAAATTTGCTTGGTGACAT	786	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357861	1553	2e-24	773 - 832	100	60 / 60	plus	ABC15677 ABC26922
MLOC	MLOC_19817.3	2011	2e-24	667 - 726	100	60 / 60	minus	ABC15677 ABC26922
MLOC	MLOC_19817.2	1409	2e-24	667 - 726	100	60 / 60	minus	ABC15677 ABC26922
MLOC	MLOC_19817.4	1863	2e-24	667 - 726	100	60 / 60	minus	ABC15677 ABC26922
MLOC	MLOC_19817.5	1314	2e-24	742 - 801	100	60 / 60	minus	ABC15677 ABC26922
MLOC	MLOC_19817.1	1405	2e-24	690 - 749	100	60 / 60	minus	ABC15677 ABC26922
JLOC1	JLOC1_13733.3	1366	8e-25	508 - 567	100	60 / 60	plus
JLOC1	JLOC1_13733.2	1364	8e-25	506 - 565	100	60 / 60	plus
JLOC1	JLOC1_13733.1	1505	8e-25	647 - 706	100	60 / 60	plus
Harvest21	ABC14086	850	3e-25	787 - 846	100	60 / 60	plus
Harvest35	U35_6545	850	3e-25	787 - 846	100	60 / 60	plus

Contig Sequence (850 bp)

>U35_6545 850 Hv_44K_v2
GCACCCAACAGCCATGACGGCGCGAGGAAGGAGCAGCCCTTGCCGGCGGCTGACCGCAGC
TCCCCCCTCCCTCTAACCCTCTCCGCCATCCATCCCCGGCCCTAGCCTCCTCTGTCGCCC
GGCCTTCTCCTGCCTGGTCGCGTGCCTGGGCAGCCCGGCGCCCGGCGCCCGTCAATCCAT
TCCGAGGGCGGCGCCTGGCTGGGCTCCGGCGCCAACCGGCCCGCAGCCGCAGCTCGCCTC
GTCCTGCGTCCCTGCTCTGCCTCGCCTTCCTGTCGTGCTCGCCTGCCCCGGGACTCCCGC
GTGCCTCCATTGCCACGGGTTGCAGGAGCCCCAACCTGCTCGGCCGCCCCTCTACTCGGC
AGTGCCCGGGTCCTCTGCCTACATCGAAGGTTCACGTTTGCCATTGACTTTAAGTATGGA
TCTCGCCCCTTTCAAGATGGATATTGACGAGTTACTAGATGATTATACCAAGGAAAATTG
CACGTCATTCACTGATTTCAAGAGAGTGTGGATGGCCAAGAAGTTTTCTTATATCTATGA
AGGCAGGCCCAAGACGAACTCGGGCGTTTTTATGCAATCCCTCTTTTTGCATTGTATTGG
CCATATGACTTCCCAAAGTTCTCTACTTCAGAGGTTGCCTGGGCTTTACTGCCTTTACTG
CCTTTATGAGTGTCAACCATACAAGCCACACTTCAAAATTTATCTGTCTCTTGAGGAGTC
CAAGAAACTCAAAGACTTTGTCATTGAGGCTAAGCAGAACGGGCTTGGTCTTGTACCAGC
ACTTGTCAAAAGGATGCTAGATAAAGGCATGTTTCTGTTTGGGTTCATAAATTTGCTTGG
TGACATTGTG

Homology of Contig U35_6545 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g35130.1	284	2e-85	protein\|expressed protein
Brachypodium v1_2	Bradi4g02810.1	285	5e-89
Arabidopsis v10	None