barSeed - Barley Seed Development Database

Probe CUST_40890_PI390587928

Source Contig U35_21520

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40890_PI390587928	Hv_44K_v2	GGATGTATTCGGGCATGCAGCATCCGATCCGCCAATCAATGAGGAGAGTTTTTGAAAAAA	753	GeneList: lightcyan1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.124	0.145	1.029	2.414	1.368	1.910
Raw	4.330	7.189	65.440	211.029	50.429	73.558

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54678.2	830	3e-22	178 - 233	100	56 / 56	minus	ABC15254
MLOC	MLOC_54678.1	1064	3e-22	205 - 260	100	56 / 56	minus	ABC15254
JLOC1	JLOC1_35202.1	1190	1e-22	291 - 346	100	56 / 56	minus
Harvest21	ABC15254	824	3e-25	754 - 813	100	60 / 60	plus	ABC15254
Harvest35	U35_21520	824	3e-25	754 - 813	100	60 / 60	plus

Contig Sequence (824 bp)

>U35_21520 824 Hv_44K_v2
GTTGCATACACACGCGCACACACAGAAGCTTCCATTGCTTTGATACGTCGTAGATACCAC
TACCAGCTAGCTAGCTAGATATACTAGAGAGTCATATAGAGTATGGGTTCTTGGAAGCGC
ACCATCACGTCGCCGTTCAGGAAGGCCTGCACCATCCTCAGCCCGCAGAACGGCGGCAGC
AGGAGCGACGACCAGCACGGCGGCAGCGTCAACGACGGCAAGAAGACGCCGCGCACGCGC
CACCACCTCAAGCGGTCCGGAGCGGCGGGGGCGGCGGCCATGGCGCAAGGCGAGGTGGTG
GAGAGCCCGTCGACGACGGCGCAGCTCTACGGCGACGTGATGGCGTGCGCCTACGAGGAC
GTGCAGGTCATGTGGTCCATGCTCGACAACAAAGCCAAGGTCGTCGACACCGCCGCCTCG
TGACCTCGCGCTGCGTCCACCATCACAGACGATCGATCGATGGGTCGAGGAGTTCCATCA
TCGATCCAGTACATACTACTGCTACACCCACTGCATTCAGAGTCTCCGGTGCTCAATCTG
AAGACCGTCGACGACGAGTCCTGAGACTCTTCTCCGTTTTGTTTTTGTTGAGCCCGAAAT
GAATCCCCGGCACTGGCATGGTACCTAATTAATTAAGCTGTAAGGTGCTAGCTAGCTTGG
AGTGATTTGATGGATTGCCGCCACAGCGTTAGGATGGATCTTTGATCATTGAGGGCATGT
TATCCTTTTCTCTTCCTTTTTGGTGTCACAGATGGATGTATTCGGGCATGCAGCATCCGA
TCCGCCAATCAATGAGGAGAGTTTTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_21520 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None