barSeed - Barley Seed Development Database

Probe CUST_40888_PI390587928

Source Contig U35_21522

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40888_PI390587928	Hv_44K_v2	GAACTTCTTTTGATCGGGGAGCGTCTTGTGCTTGAACACTTGGTTTTGACATGAATGTGC	827	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370740	2077	7e-23	793 - 853	98	60 / 61	plus	ABC08821 ABC10382 ABC20973
MLOC	MLOC_20605.2	864	7e-23	271 - 331	98	60 / 61	minus	ABC08821 ABC10382
MLOC	MLOC_20605.3	851	7e-23	261 - 321	98	60 / 61	minus	None
MLOC	MLOC_20605.4	787	7e-23	116 - 176	98	60 / 61	minus	ABC08821
MLOC	MLOC_20605.1	1977	7e-23	1387 - 1447	98	60 / 61	minus	ABC08821 ABC10382
JLOC1	JLOC1_14284.2	1981	4e-23	531 - 591	98	60 / 61	plus
JLOC1	JLOC1_14284.1	1656	4e-23	501 - 561	98	60 / 61	plus
Harvest21	ABC15203	926	3e-25	828 - 887	100	60 / 60	plus
Harvest35	U35_21522	926	3e-25	828 - 887	100	60 / 60	plus

Contig Sequence (926 bp)

>U35_21522 926 Hv_44K_v2
GCGTAATCCCAATCCCTCCCCTCGTCTCCCCGTCGCACGCGACCTCAGAGGCGATGCGAC
GGTGTTAGGGTTTGTGCCGCCGCCCCGTCCGCTCCCCCTCCGTTGCCGGCCACAGGCAAT
ATCACGCCGCCGCCTGATTTCTTATCTCCCTCGCCCCCCAGCCCCCTACTCACACACCCT
CCACGCCTCCTCCGCGACCCCTCGGCGACGGCGGCCGGAGGCCACATCTGCTTCTTCCCG
ACGACCTCCGGAAGCTGCCCGCCAGCCGGCCCCTCCAGCAACCTCCCATCCGCGCCGGTT
CCACCTCTCCCGAGCAAGGTTTTTTTTGTAAGAAAAGAAGAAAATCATAGATGGATATCA
TGCAGACTAGTGACTCTTCACATCATGGAATTGTAGAGAACAGCCCTTATACAACTCCCT
ATGATAGACGTGTGGAAGGTGACCAACTTGGTGCTTCGTGGTATTTTAGTAGAAAAGAAA
TAGAAGAGAATTCCCTTTCAAGGAGAGATGGTATTGATTTAAAGAAGGAGTCTTACCTTC
GCAAGTCATACTGCACTTTCCTTCAGGATTTCGGGATGAGGCTTAAAGTGCCCCAAGTAA
CAATTGCTACAGCTATAGTATTCTGTCATCGTTTTTTTCTTCGTCAATCTCATGCCAAAA
ATGATAGACAGACAATAGCCACCGTTTGCATGTTCTTGGCGGGTAAAGTTGAAGAAACAC
CTAGACCCCTGAAGGATGTCGTACTCATCTCTTATGAGATAATCCACAAAAAGGATCCTG
CTGCAGTTGCTCGAATTAAGCAGAAGGAAGTGTATGAACAACAGAAGGAACTTCTTTTGA
TCGGGGAGCGTCTTGTGCTTGAACACTTGGTTTTGACATGAATGTGCACCACCCCTTACA
GCCNTTTGGTTGAAGCAATAAAAAAT

Homology of Contig U35_21522 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g30020.2	544	4e-96	protein\|cyclin-T1-4, putative, expressed
Brachypodium v1_2	Bradi1g47510.1	488	2e-112
Arabidopsis v10	AT4G19600.1	541	5e-77	\| Symbols: CYCT1;4 \| Cyclin family protein \| chr4:10673619-10676532 FORWARD LENGTH=541