barSeed - Barley Seed Development Database

Probe CUST_40887_PI390587928

Source Contig U35_21523

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40887_PI390587928	Hv_44K_v2	CTTCACCTGAATCTGTGAATTATGGTTCACTCCTAGTGCGCCTTCAAAATTCGCTCCTGA	384	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368100	2958	2e-24	439 - 498	100	60 / 60	plus	ABC20303
MLOC	MLOC_74653.3	732	2e-24	667 - 726	100	60 / 60	minus	None
MLOC	MLOC_74653.2	2111	2e-24	2043 - 2102	100	60 / 60	minus	ABC20303
MLOC	MLOC_74653.1	2582	2e-24	2514 - 2573	100	60 / 60	minus	ABC20303
JLOC1	JLOC1_49770.1	2582	8e-25	10 - 69	100	60 / 60	plus
Harvest35	U35_21523	444	3e-25	385 - 444	100	60 / 60	plus

Contig Sequence (444 bp)

>U35_21523 444 Hv_44K_v2
ATTATTCCGCCGCGTGCAACACCACCAGTCCTCCTGCTCCCATGGGCGACGGGTGCAGCT
AATCTTCCTCGGGGATTCCTGCCGCCCCTCCCCCTCTGGAGCTTCGGGGCGGCGAGGCGC
GCTCTGAGGCAATGGGGGTGGCGCGGAGGGAGCAGCGGGCTGCCCCCCTCCTGTGGGCGG
CGGTTCTTGCGGTGGCGCTGCTGGCCGGCGCACGCGGCGGCTCCGAGGAGGGCACCGCGG
TGTACATTGTGACCATGAAGCAGGCGGCGGTGTCCCACAAGCGCCTCGACCTGGAGAGGG
TTGGGAGCAGCAGCGTTGCCGCCGCCGGCGGCGGCGGCGGAGGGGATAACCCGGCCACCA
GCATCCTCAGGAAGCCGAGGCATGCTTCACCTGAATCTGTGAATTATGGTTCACTCCTAG
TGCGCCTTCAAAATTCGCTCCTGA

Homology of Contig U35_21523 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None