barSeed - Barley Seed Development Database

Probe CUST_40885_PI390587928

Source Contig U35_21526

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40885_PI390587928	Hv_44K_v2	CATAAGCATCATTACTGCAACCACTAACCAGACTCCTGGCCTGAATGTCATCACTGAATA	1498	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359748	2694	2e-24	1504 - 1563	100	60 / 60	plus	None
MLOC	MLOC_51613.6	4237	2e-24	804 - 863	100	60 / 60	plus	ABC20795
MLOC	MLOC_51613.1	2948	2e-24	1897 - 1956	100	60 / 60	plus	None
MLOC	MLOC_51613.3	2222	2e-24	811 - 870	100	60 / 60	plus	ABC20795
MLOC	MLOC_51613.5	3070	2e-24	804 - 863	100	60 / 60	plus	ABC20795
MLOC	MLOC_51613.2	5695	2e-24	2061 - 2120	100	60 / 60	plus	ABC20795
MLOC	MLOC_14691.2	949	3e-21	756 - 815	97	58 / 60	plus	None
MLOC	MLOC_14691.1	1534	3e-21	759 - 818	97	58 / 60	plus	None
JLOC1	JLOC1_32986.2	4749	8e-25	646 - 705	100	60 / 60	plus
JLOC1	JLOC1_32986.1	5313	8e-25	803 - 862	100	60 / 60	plus
JLOC1	JLOC1_10032.2	1606	2e-21	554 - 613	97	58 / 60	plus
JLOC1	JLOC1_10032.1	1890	2e-21	838 - 897	97	58 / 60	plus
Harvest21	ABC15091	1558	3e-25	1499 - 1558	100	60 / 60	plus
Harvest35	U35_21526	1558	3e-25	1499 - 1558	100	60 / 60	plus

Contig Sequence (1558 bp)

>U35_21526 1558 Hv_44K_v2
TCCCGGGCTCCACTCCGGTCCAGACTCTAGAGCAGAGCACGGGTGCGTAGTCACAGGCAA
GCCGCCATTAAACCGCCTCACGCGCAATGGGTGAGATAGCGGCGGACGAGCGCGGGCTCG
CCGGCGGCAAGGGGTCGGGGTCGGAGTCGGAGTCGGAGGAGACGTCCCCGATCGAGGAGG
TCCGGCTGACTGTCCCGCCCGGCGACGACCCGACGCTGCCGGTGTGGACGTTCCGGATGT
GGAGCATCGGGCTGCTCTCCTGCGCGCTCATGAGCTTCCTCAACCAGTTCTTCTCCTACC
GGACGGAGCCGCTGATCGTGACCCAGATCACGGTGCAGGTGGCGTCGCTGCCCATGGGCC
ACTTCCTTGCCCGCGTGCTCCCGCGCCGCACCTTCCGGGCGCCCGGCGGCGGGGAGTGGA
GCCTCAACCCGGGGCCCTTCAACATGAAGGAGCACGTGCTCATCTCCATCTTCGCCAATG
CCGGCTACGCCTTCGGCAACGGCAACGCCTACGCCGTCATGATCGTCGACATCATCCGCG
CCTTCTACGGCCGCTCCATCTCCTTCATCGCCGCCTGGCTCCTCATCACCACCACCCAGG
TGCTCGGGTACGGGTGGGCGGGGCTGATGCGCAAGTACGTGGTGGAGCCGGCGCACATGT
GGTGGCCGAGCACGCTCGTCCAGGTCTCGCTCTTCCGGGCACTGCACGAGAAGGAGGAGT
CTTCCAAGGGCTCGCGTCAGATCTCCCGCTCAAAGTTCTTCCTGGTGGCGCTCATCTGCA
GCTTCGCGTGGTACGTCGTGCCGGGCTACCTCTTCCCGGCGCTCACCTCCATCTCATGGG
TCTGCTGGGTCTTCTCCAAGTCCGTGACGGCGCAGCAGCTCGGCTCGGGTATGAAGGGCC
TGGGCCTCGGAGCCTTCACACTCGACTGGTCGGCCGTCTCCTCCTTCCTCTTCAGCCCAC
TCATCTCACCCTTCTTCGCCACCGCCAACATCTTCGTCGGCTATGTCTGCTTCCTTTACG
TGCTCGTGCCCACGGCATACTGGGGGATGAACCTCTACAACGCCAAGACATTCCCCATAT
TCTCCTCGCACCTGTTCATGTCTAACGGATCCGCATATCAGATCACTGACATTGTGAACC
AGCAGTTCCAGCTTGACACGGAGGCGTATGCAAGGCTCGGAAGGATAAACCTCAGCACCT
TCTTCGCGCTCTCTTATGGGCTCAGCTTCGCCACCATTGCCTCCACCATCACGCACGTCG
GCATCTTCTACGGAAAGGAGATCTACCAAAGGTTCCGAGCTTCGCAGCAGGAGGAGCCTG
ACATCCACACGAAGCTGATGAGGAAGTACGACGACATACCAGCGTGGTGGTTCTACTCCC
TGACGGTATTGTCGATGACAGTGTCCCTCATCCTCTGCACCGTCCTCAAGGACCAGGTTC
AGCTCCCATGGTGGGGCCTCCTCTTCGCCTGTGGCATGGCCTTCGTCTTCACGCTCCCCA
TAAGCATCATTACTGCAACCACTAACCAGACTCCTGGCCTGAATGTCATCACTGAATA

Homology of Contig U35_21526 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g43940.1	756	protein\|oligopeptide transporter, putative, expressed
Brachypodium v1_2	Bradi3g52290.1	754
Arabidopsis v10	AT5G64410.1	729	\| Symbols: ATOPT4, OPT4 \| oligopeptide transporter 4 \| chr5:25750921-25754974 REVERSE LENGTH=729