barSeed - Barley Seed Development Database

Probe CUST_40883_PI390587928

Source Contig U35_21528

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40883_PI390587928	Hv_44K_v2	TGTCAAATGAATCAAGCACATGTGTTGCCACGCAACACCAAGCAAATATTGGCGCATCAG	692	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.661	1.897	0.982	0.843	0.352	0.726
Raw	34.833	63.292	28.499	37.696	4.572	12.698

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6753.2	2151	7e-23	498 - 558	98	60 / 61	minus	ABC16172
MLOC	MLOC_6753.1	1626	7e-23	678 - 738	98	60 / 61	minus	ABC16172
JLOC1	JLOC1_4413.1	2004	4e-23	897 - 957	98	60 / 61	plus
Harvest21	ABC16172	752	3e-25	1 - 60	100	60 / 60	minus	ABC16172
Harvest35	U35_21528	752	3e-25	693 - 752	100	60 / 60	plus

Contig Sequence (752 bp)

>U35_21528 752 Hv_44K_v2
TGCAAAGCGTTGCTCCCTGATTCAAACCAAGAACCTAGCAGCATCAAGCAGCAAACAAGC
AGTTCAGTGAAAGAAAAGGTAGTGTACAAAGATGATATTATTAAGATGACAACTAGAAGA
TCCAGACGTAAGAAAGAAGTTGAACCGTCTGCAGCTGAGAATGCCACACCAAAGACCCTT
GAAAACAGCACAGCTGACAGTGCTTAAGCATTTGGACTCACAAGACTGAAAGAAACAGGG
TGACACAAGCAACATGCCGCTTCATCACACTGATTGCCTGAAAAGACTAGGATTGCAACT
ACAACATCCACGGACGGTACTACCGGAACTACATGACATGGCTGGCTGCCCAGATTGCCC
ACTTGCCCCCTCGAGATTGGACCCCTACAGAAAGGGAGAATTGTTGATCTGTTCAAGTAT
TTGCTCCCAAACGGAGTAGATGTGAAATCTCACCTGGCTTATGTTGCCGCTTTAGCATGC
ACAACGATTTTGGGTGTGTTCACATCCCGCATTTTGTCCTAGTGCGGCAAGGAGTGCCTA
ATGTGGCTTCATTACTTTAGCATGGACTAGCTAAATAGCTGTGTGTTGCCACGGAACACC
AAGCAAATATGTGCATATCAGTTGTTCCATTTTGTCAAATGAACCGAGCAAATGTGTTGC
CAAGCAAATATTGTGTGTCGGTTGTTCCATTTTGTCAAATGAATCAAGCACATGTGTTGC
CACGCAACACCAAGCAAATATTGGCGCATCAG

Homology of Contig U35_21528 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None