barSeed - Barley Seed Development Database

Probe CUST_40882_PI390587928

Source Contig U35_21529

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40882_PI390587928	Hv_44K_v2	GTCTTGTTGCTGAGTCTCGTCGTTTTGAGTTATTTAGGGTTCATCTTTTGAGTTTCTTGC	555	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.557	0.605	0.964	1.570	1.033	1.278
Raw	969.672	1655.792	2308.667	5912.027	1360.829	1849.607

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61797.1	881	2e-24	680 - 739	100	60 / 60	plus	None
JLOC1	JLOC1_40401.1	1021	8e-25	681 - 740	100	60 / 60	plus
Harvest21	ABC14896	615	3e-25	556 - 615	100	60 / 60	plus
Harvest35	U35_21529	615	3e-25	556 - 615	100	60 / 60	plus

Contig Sequence (615 bp)

>U35_21529 615 Hv_44K_v2
CGAGACACAGAGGCGATCGAGAGGGGTCGGAGATTCGGGAGAGTCGGCGGCGACGCAGGA
GAAAGCGGTCGGGGAGAGGCCGCCTCCCGCCGGGGAGGGTCTCGGAGAGCGTTGGATATG
GTGCCGGCGAAGGGGTGGAGCCGGAGGGTCGGGAGCGCCCGCTCGTTCGTGGGGAACGCT
CTGGGCGGCGTCCGCGGGTGGACCAACGTCGCCTCCTGGGCCGTCGCCGGGACCCTCGCC
TACTACCTATGGGTCCAACCCGCGCGCCAGCTCCAGAAGGAGCAGCAGGAACGAGCTGCT
TTAGCCGCCGCCTCGGATCCCTACCGTTATGTCGAGAAACGGAAGCCAATTCCTGATCCT
CAGGACACTGGCCTAACTTACGGGAAGAAGAAGGATCCTCCGAAGTCTGATAACTAGTTC
ACCTGGGAACATCTTGTACCAAATGCGGCGTCCGTTCGACTGGCAACGTCCCAATATGGG
ATTCTGCAAGTCTGATTGCTACCACATGACAAGCATATTGTCAAAAAGCCTGCTTCCTCA
TGTTAGCAACCCGTGGTCTTGTTGCTGAGTCTCGTCGTTTTGAGTTATTTAGGGTTCATC
TTTTGAGTTTCTTGC

Homology of Contig U35_21529 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g40190.1	101	9e-59	protein\|expressed protein
Brachypodium v1_2	Bradi3g40220.1	101	8e-59
Arabidopsis v10	None