barSeed - Barley Seed Development Database

Probe CUST_40870_PI390587928

Source Contig U35_21530

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40870_PI390587928	Hv_44K_v2	GTATGAAATTTTTGCTGCACCGGAGCGTCATGCCAATGGCTGATGGTTTAGTTTAAAAAA	1964	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.451	1.383	1.071	0.870	0.380	0.420
Raw	1174.613	1703.839	1198.191	1508.499	236.470	282.082

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67910.1	2110	3e-21	82 - 135	100	54 / 54	minus	ABC16581
JLOC1	JLOC1_44884.1	2125	2e-21	1993 - 2046	100	54 / 54	plus
Harvest35	U35_21530	2035	3e-25	1965 - 2024	100	60 / 60	plus

Contig Sequence (2035 bp)

>U35_21530 2035 Hv_44K_v2
CCCGGGCTGCAGGAAAACGCAAATACTTATTTTTCTCTCTCTATATTCAACTCCCTTCTC
ACCTCGTCGGCGTCCTCCTCCTCTTCTTCGATCTCTCCTCCCATTTCAACGCTCAGGGGA
GTGGCGGCGGGTAGAAAGTCCCTGCTTTTGCGCCTCCGCAGCATGCGGCGCTAGCTGCGC
TGGGGCCCCACGCCATGCAGAGCGGGCCCGCATCGCCGACCCCGCCGGAGGACACACCGA
TGGCGGCGGCGGCGGCGGCGGCGGTGGCCGAGGTGGAGGTGATGGAGGAGGCTGACGGGG
AGCAGGCGAAGGAGGATGCTGTGAAGGTGGCGGAGCCGCAGCCGGAGAGGGGAGTGAAGA
GGGGGCGGGGGCGACCGCGGCGGCGGCCCGTGGCCGTGGATGGGAGCGGGGTGGTGATGG
TGAAGCGGGAGCAGCTCGCGCGCTGCATGACGTGCAAGCTCTGCCACCGCCTGCTCCGCG
AGGCCACCACCATCTCCGAGTGCCTCCACACATTTTGTAGAAAGTGTATCTATAAGAAGC
TTAATGATGAAGAGCTTGACCATTGTCCAGTATGTAAAATTGACCTTGGCTGCGCTCCAG
TTGAGAAGCTTAGAGCCGATCACAATAAACAAGACGTGAGGTCAAAAATATTTCCTTTAA
AAAGAAATAAGATCGATGCTAAAGAATCTCCAGTTTCACTGCCTATTAAAAGGAAAGAGA
GGTCTATCTCTTCATTGGTGGTTGATACACCTCGAATAACAACGGGTTTGACTGGGCGCC
GAACAAGAGCCGTTACTAGGAAGGCTGCGGCTGCATTACGTGGCCTTGGTCCTATCCTTG
ATCCTGTAGAAAGGGATAATGGCAGCGCCAATAAGCATCCTGATAATTTAAGCTTGCTGG
ACAGCTTGAGCAAAGTGCCTCAAACAAGAAGGAAGGCATCATCGATTGCAGACACGTCAA
GTCATAACTCTAATAAAGATAAAGCAGGTGATGATAAGGACTTGGATAAGGCAGATCTCT
GGAAACCTCTAAACTGTCTTGTAGAGGCTGCAAGCAAAACAAAGTCCTTCAGGTCATGTT
CATCTGTTAAGGGAGATCAGCCCAATGGATCTCCTAGTAGTGAACAGGCTAGCAGAGAGA
AGCCTGTGGAGAATCTACGGAAGACCAGATTTCAAGATGACAAGAAAGATGCTCCACAGT
CAGTAGTGCTTAAAAAGAAAGGGCCTGGCCGGACGAAGAATGCAACTTCTGTTGCTGCAG
CTATCCAGAAGGACCAGTATAGTACGGCACTAAACCCTGTATGGTTCTCATTGATTGCCT
CGTTTGAGCAGAAAGGTGACCCACCCTTGCCACAGATACCTGCCCATTTTTTGAGAATAA
AAGATGGAAGTATAGCCGCATCATCCATCCAAAGGTACATTATGCAGAAGCTCAGTCTTG
GAAGTGAGTCTGAGGTTGAACTGAGCTGCTGTGGGCAGTCAATAAACCCTATACAACCTG
TGCACAACCTGATGGATAGGTGGCTGAGGGTTGGCCCGTCGCGCCATTTGCAGACGTCGG
TTGGCTCCTCTGGGGGAGACTATGTGATGGTGATAACTTATGGGCGGCCAAAGTCTTGAG
CGCACCATGCTGCTCCAGGCGATCTCCTGATGCGCAAGGAGGGTTGCGCCTTGCCTTGGG
AAGAGGTCCTCGACAGATAAAAGGGTTCTCTCCCTGTCGACATATACTGAAAAGAATGTG
GCTGGCTCGGTCTGCAGCCAGCCCACCTTGTTGGTCTTGATCTGATGCTGTTGGATTCTC
TCTCAGGGTTTATTTGTTGTTCCCCTAGTTCGGTTCATACCCTTGTTATATACAGATGAA
ATTTGTTGTTGTTTGAAACTGTGCGAAAGTTGACTGAGGCTTGAGGCTGGATAGAGTGAT
GATATGTTTCTCAACCTTCGCGTGGAAGGGGTGAATGGTGGGCTGTATGAAATTTTTGCT
GCACCGGAGCGTCATGCCAATGGCTGATGGTTTAGTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_21530 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g40790.1	395	5e-139	protein\|zinc finger family protein, putative, expressed
Brachypodium v1_2	Bradi4g02647.1	480	4e-165
Arabidopsis v10	AT2G30580.1	420	1e-78	\| Symbols: DRIP2 \| DREB2A-interacting protein 2 \| chr2:13026444-13030363 FORWARD LENGTH=420