barSeed - Barley Seed Development Database

Probe CUST_40858_PI390587928

Source Contig U35_19221

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40858_PI390587928	Hv_44K_v2	CTCAATGCCATAAACCTGCATTGATCTTCACTCATGTCATCTGATAGAAGCCTATTGAAT	1106	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_49246.1	747	7e-23	463 - 522	98	59 / 60	plus	None
MLOC	MLOC_1008.2	490	3e-21	255 - 314	97	58 / 60	plus	ABC38305
JLOC1	JLOC1_31540.1	683	4e-23	411 - 470	98	59 / 60	plus
JLOC1	JLOC1_629.1	423	2e-21	218 - 277	97	58 / 60	plus
Harvest35	U35_19221	1197	3e-25	1107 - 1166	100	60 / 60	plus

Contig Sequence (1197 bp)

>U35_19221 1197 Hv_44K_v2
GCCCGCTCGTCGCGTCTCTCTTCTCCTGCGACGTCGCCGGATTCAAGATCTCCACCACGA
CGGGAATCACAAGCCAAGGGAGTGTGTCGAGGGCTCGAGGCTATGGCGATGTTGATTCCC
TTCCTATCGTCGTCACCGTGTTTCACCACTTGTGGCAGGAAGCCATGGCGGACGCAGAGA
AGCCTCGTGCCGAGGAGGCGGCTCCAGCTGCAACGCCGGACAAGTGATCCCGACGAGGCT
TGAACAAGAGTCAGGGTTCTACTTCAACACCAAGTACTTTGAGGAGAAGGTCCATGCTGG
GGAATGGGATGAGGTGGAAAGGTATCTCTCAGGTTTCACCAAGGTGGACGACAATAGGTA
TTCAATGAAGATGATCAGGAAGCAGAAGTATTTGGAAGCGCTTGATAGGCATGATAGAGC
AAAGGCCGTTGATATTCTTGTCAAGGATCTTAAAGTCTTCTCGACATTCAGTGAGGAGTT
ATATAAAGAGATAACACAGCTTCTCACTCTTGAGAATTTCAGATTCTTTTTTCCTACCCC
ATGTTATCATTATTGTTTGTTTTCTCTTTTTCTTTATGTGGAAGCCATTCTGAAAGTTTC
TTGTAATTGATGTTTGCCTCATATGGTCTTGTAATGACGACAAGCGCATCCGCGCCTCTA
TGCCGTCCATCAAGTTCCTCATGGGAAAGGGTGCCAAGGTCGTCCTGCCAACCATCTGGT
GAGCATAGGCTTCCACCATTCAGCCTCCATTGCGGCGCACGATTGTAGCTGGGAGCAACA
CCATAGGATGGCCCAGCCACGCCTTGATCGTAGACCTCACCGCAGAATAAACAACCAGGC
GTAGCTCCATTTCATTCTATAAGCGTCCCAGGATGTGTATGCTAGCCTCCTCCGCTGCAT
TTGCAGGCCGACGAGTCCAACTCCTCTGCGGTGCAGATCACCCGCCTGCCACGCTGCGCA
ACTCAGGATGCAGGCGATCCTCCTCCGTGGCAAGGAACGTGGCGAGATGGTGGGCTCCAA
GGCCATGGAGATATTGTTGCCCCTGCAGCTTGAGATGTAATTGGTCCAAATGAATAACCA
CCATTTCGAAGGGTTAGTAGATGATGCTCAATGCCATAAACCTGCATTGATCTTCACTCA
TGTCATCTGATAGAAGCCTATTGAATTTCAATTAAATTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_19221 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None