barSeed - Barley Seed Development Database

Probe CUST_40853_PI390587928

Source Contig U35_19225

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40853_PI390587928	Hv_44K_v2	ATAGTTTCACATGTGCTTGAGTAGTATTTTACAGCGCGCCTTTCCTCGAGTGGCACACAT	216	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.840	1.166	1.292	1.321	0.486	0.990
Raw	13.924	30.606	30.017	51.821	5.682	13.642

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3556.1	1241	2e-24	104 - 163	100	60 / 60	minus	None
JLOC1	JLOC1_2139.1	1030	8e-25	104 - 163	100	60 / 60	minus
Harvest35	U35_19225	910	3e-25	217 - 276	100	60 / 60	plus

Contig Sequence (910 bp)

>U35_19225 910 Hv_44K_v2
AAAAAATAGCTGATTTAATCATTCACTGATTCATGCAAGTAGACTTTGCTGCTTTTTTGG
CCAATTTTCTTATATCTAAACTTCTGAAATGTGTATGCACCTGTAGTTGAGATGTTCTAG
TTGTTTTTAAAACTAGTTAGTCAGAGTGCCATTCACGTGTATTTTTTAATCTGGATAGTG
AGAGTGCTGTTCAGATGTTGTAGTACAGAAATGTGAATAGTTTCACATGTGCTTGAGTAG
TATTTTACAGCGCGCCTTTCCTCGAGTGGCACACATGACTGGCATCTTGACGCATATGGC
AAGCAAGGTCCAGCAGGAGGCAAACAACGGCGTTCTTCTTCGTCGTGGGATCTAAGGTCC
AGCAGGAGGCAAACAACGGCGTTCTTCTTCGTCGTGGGATCCTAAAAAGTAGTCTGGCAT
GAAGCTGTGACATGCTCATGTATGTGCCCTGCACCAACAGCAGCTACACTCCTAAGGGGA
TGAAATCGAACAAAAGAGCAGAGATGGAAACATGGAGTGTACATTTCCAGCTATAAAGGA
TCCAGCTCAGTTGGTGGTTTCACATGCAAAGTCGAGTAAGGATGTTCTAAAGCACCCAGA
AGAAGTAGAGGACAGGACAGGAGGAGGGAACAAGAAGCTTCGTTTATCATTGATGTTATA
TGTGATCAACAAAAACTTGTGCTTCTCATCCAATTTTTGTCAAACTATGTTGATGTGTGG
TTATGCACTTGTCGGGCCCTTTTGCTGTGCACCTGTACTTTAGAACTATTTTGTTGTGTA
CTTGTTGGGCCTTGAATCTTTATGTGTAGAGGAGTCGATGGATGATGTATTGTAATTCAT
GTGATGTGTTACTGAAATGAAATATATACAAGTAATTTATAATCTTTTATTCTAAAAAAA
AAAAAAAAAA

Homology of Contig U35_19225 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None