barSeed - Barley Seed Development Database

Probe CUST_40845_PI390587928

Source Contig U35_21545

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40845_PI390587928	Hv_44K_v2	CCTCAAAAGGCAAAAGTATAAAACCTTAGGAGAATCTGACTAGTGAAGGAAAGGGATATT	1383	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.806	3.387	1.400	0.885	0.561	0.686
Raw	35.328	68.169	24.500	23.825	3.507	6.361

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81208.1	2010	2e-24	15 - 74	100	60 / 60	minus	ABC16201
MLOC	MLOC_81208.2	1843	2e-24	15 - 74	100	60 / 60	minus	ABC16201
JLOC1	JLOC1_54034.2	1831	8e-25	1682 - 1741	100	60 / 60	plus
JLOC1	JLOC1_54034.1	1986	8e-25	1837 - 1896	100	60 / 60	plus
Harvest35	U35_21545	1448	3e-25	1384 - 1443	100	60 / 60	plus

Contig Sequence (1448 bp)

>U35_21545 1448 Hv_44K_v2
GAGAGAGAGAGCGAGGAGGCCGCGGAGAGGTGGGGGCACGCCATCAGAGATCGCTTCGCC
TCGCTTGGTCGACCGAAGAGATTGTTCTTCATAGTGAACCCTTACGGTGGGAAGAGAGGT
GGACGGAAGATTTTCCAAACCGAAGTTCTGCCTCTTATTGAAGCTGCTGACATCCATTAC
ACCATGCAAGAAACCAATTACCGTCTTCATGCTCAAGAAATTGCTGGTTCACTGGATCTT
AGGAAGTATGATGGGATCATTTGTGTTAGTGGAGATGGTATCCTTGTAGAGGTTGTTAAT
GGTCTGCTGCAAAGAGATGATTGGGACAAAGCAATAAAAGTGCCACTAGGGATCATTCCA
GCAGGTACTGGAAATGGAATGGTACAAGGTCTATTGCACTCTGCTGGTGAACCCTTCTCT
ATGTCAAATGCTGTGTTTGCAATCATCAGAGGTCACAGACGTGCCCTCGATGTCACTTCT
GTTGTGCAGGGAAAGACAAAGTTTTTCAGTGTCATGATGCTTACATGGGGTTTGGTAGCT
GATATTGATATTGAGTCAGAAAAGTTTAGGTGGATGGGAAGCGCTCGCATCGACTTTTAT
TCCCTTCTACGTGCGGTGAACTTGCGACGGTACAATGGGCGTATTCTTTTTGTTCCTGCC
CCAGGATATGAAGGATTTGGTGATCCTGTGGAGCAAACTATTAGTTGTAAATCAAATGGG
GCTAGCAATGCCGTCGAAGGAGACATAACAAATGTTCATAATAATGAAACATGTACCTAT
TCAGGTCCTTCAACCGACGACCCTGATCTTGAATGGAGATCATTGAAGGGTCCGTTTGTT
AACGTTTGGATCAGCAATATTGCTTTTGCTAGTGAAGGTGTAATGATAGCGCCACAAGCA
CAGTTTGCAGATGGCTACTTGGACGCAGCTATAATCAAGGATTGCCCATGGTCGGTTGCA
CTCGGGCTCTTGCTTCGGATGAAGGATGGTAGCTACATCGAATCGCCCTATGTGGAGTAC
TTCAAGGTGAAGGCTCTCCGGATCGAGCCGGGCCTGCGCGTCGGCAGCAGCACCATAGGC
GGCATCATCGACTCAGACGGAGAGGTTCTCGCGAGAGGCGACAGATCCCAAACCAAGGAA
GAGCCGGAGCATCTAATGGCGTATGGCCCCCCTATCCAACTGACGGTGGATCAGGGGTTG
GCCACCATCTTCTCCCCAAGATGATATGAATTATTTCTCCCTTGTTCCCCTCTTCTTACC
CCTCACATGGTTGCGTCTCAGCACATATTGTATGTAAATACTCACACAGAAATGCAAGAG
GCTGTTGATGTTTGTCTGAATCCTGGATATAACCGATGGCGTCAGAGCTCAGTCAGAACT
GAGCCTCAAAAGGCAAAAGTATAAAACCTTAGGAGAATCTGACTAGTGAAGGAAAGGGAT
ATTTTTTT

Homology of Contig U35_21545 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g37580.1	378	0.0	protein\|diacylglycerol kinase, putative, expressed
Brachypodium v1_2	Bradi1g24730.1	517	0.0
Arabidopsis v10	AT4G21534.1	481	7e-150	Diacylglycerol kinase family protein \| chr4:11456230-11458820 FORWARD LENGTH=481