barSeed - Barley Seed Development Database

Probe CUST_40839_PI390587928

Source Contig U35_19231

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40839_PI390587928	Hv_44K_v2	CTGAATTAGTCGGATCTGAAGCTAGAATTGCTTGCCCGCTCTAAAAAATTTTAGAAAAAA	776	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.882	2.012	1.021	0.935	0.255	0.381
Raw	88.861	145.656	64.965	94.779	9.411	14.853

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_19231	840	3e-25	777 - 836	100	60 / 60	plus

Contig Sequence (840 bp)

>U35_19231 840 Hv_44K_v2
ATAGTGTGTGGAATATTTGGAACCCTGNCAGGGGGTTTCATCCTTGACAAGATAAACTCT
ACAATTTCTAATGCTTTCAAGCTTCTTTCTGGCGCAACTTTCCTAGGGGCGATATTTTGT
TTCGGTGCCTTTTGTTTCAAGAGCCTTTATGGGTTCATACCCTTTTTTTCAGTGGGGGAG
CTCTTGGTTTTTGCAACTCAGGCTCCAGTAAACTACATATGCCTTCATTCTGTGAAACCA
AGTTTGCGGCCATTATCAATGGCTATGTCTACTGTTTCAATCCATATATTGGGTGATGTG
CCTTCCTCACCCCTTGTTGGGTTAATTCAGGACAAACTCCATAACTGGAGAATAACGGCG
CTTTTGTTGACATCCGTCTTCATTGGTGCATTTGGATTTTGGTTTTGGGGCATATTTTTG
AATAGTGTTGATCGTTTCAATGAGCAGAGCGAGCATGGTGTTCCTGCCACTGAGAGATCA
AACCTCAGGCCATTGCTTGATGATGGAAACGATGAAGCGCGCACTTCTGAATGATGAGTG
AGGTCATCGACCAAGATGTCTTTTTCTTTCTTAGCCGGATTATTTCGGCCGTGCCAGCAA
GCATTGTGAAATGTAAATTTGCATGTCCGTTGGCTGTACCTGTACATAAATCATCATTTG
CTCTATTGGTCTTCTTGGCTTTTGTGTACAGACTGCAGATAACTGTAACAGAGTGTATCA
GTCGTGTAACTTATCAGAAAGGTGGGTAATGTTTGCACATGTCAACAATTTTTTTTCTGA
ATTAGTCGGATCTGAAGCTAGAATTGCTTGCCCGCTCTAAAAAATTTTAGAAAAAAAAAA

Homology of Contig U35_19231 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g44430.1	565	1e-81	protein\|transporter, major facilitator family, putative, expressed
Brachypodium v1_2	Bradi5g16257.1	523	5e-83
Arabidopsis v10	AT5G64500.1	484	9e-57	Major facilitator superfamily protein \| chr5:25780511-25783474 FORWARD LENGTH=484