barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_40838_PI390587928Hv_44K_v2GCGCTTTAGACGCACGCGGTTCCAAATTAATGCCGGATAAAAAGGATTTTGGGTATAATT161GeneList: thistle1
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 6.0371.9721.0190.7360.4470.454
Raw 1495.503728.940349.382391.77384.41496.248



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest35U35_335257013e-25162 - 22110060 / 60plus



Contig Sequence (701 bp)

>U35_33525 701 Hv_44K_v2
AACGAAGACCCCGTTTCAAGCGGGTGAAGCCTATGGTGCCCGGATGGTTGAAGCTGTTAA
TGAGAATAGTAATTCGCTTTTCTTGCAATAGGACCTGGGGATTTCTGGTTCATCATGCTA
TTGCTCTAGGTTTGCATACAACTACATTGATTTTATAAAGGGCGCTTTAGACGCACGCGG
TTCCAAATTAATGCCGGATAAAAAGGATTTTGGGTATAATTTTCCGTGTGACGGCCCAGG
GCGCGGCGGTACTTGTGATATGTTTCCAATGCCGAATTATTGGTAACCCAGCGGGCGCTG
GTGACAGGTGCGCTGCTCGGCGGGGCGGTCGTACTCTTCGCCTTCGCCGCCCTCGCCGAG
GAATTCGTCCACTCCTTCAATGGAGCCCCCTCTACCGCCTCCTCTAAGACGATCATGAGG
AGAGAGGAGCTGCTGAAGCTGCCTGCTGAGGCGAGGCAAGACGACGACCTCGCTGCGGCT
GCTGCGGAGGCCGCCAATGGACGCCCGGTTTACTGCAGGGACCGCTACTACCGGGCGCTC
GCCGGCGGTCAGTACTGCACCTCAGACGACCTGGTCGACTGATTAAAGCAAATAGTAATA
CATACGTATTCGGGTATATGCAGGTTGCCACATTGGTATGATATGCAGAAGTTAAGCAAA
TGTATCTTATCGGAATGAAATTTTGGGAAGATCGATGTTGG



Homology of Contig U35_33525 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None